/usr/include/ncbi/mmdbapi4.h is in libncbi6-dev 6.1.20120620-7.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 | /* mmdbapi4.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: mmdbapi4.h
*
* Author: Christopher Hogue
*
* Version Creation Date: 10/18/95
*
* $Revision: 6.2 $
*
* File Description: Code for Modelstruc -> Biostruc conversion
* And User-feature handling.
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
* $Log: mmdbapi4.h,v $
* Revision 6.2 1999/02/26 14:17:52 beloslyu
* fixed declaration of WriteAsnModelList function to synchronize with cn3d to save out mime data
*
* Revision 6.1 1998/03/10 04:31:11 lewisg
* change name of MakePDBSeqId to MakePDBSeqId2 to avoid name conflict
*
* Revision 6.0 1997/08/25 18:11:19 madden
* Revision changed to 6.0
*
* Revision 5.1 1996/11/22 21:18:21 epstein
* add BiostrucAnnotSetToSeqAnnot()
*
* Revision 5.0 1996/05/28 14:02:09 ostell
* Set to revision 5.0
*
* Revision 1.4 1996/02/07 23:06:41 hogue
* fixed a type cast in FreeSingleModel
*
* Revision 1.3 1996/02/02 20:19:50 hogue
* *** empty log message ***
*
* Revision 1.2 1996/02/02 19:45:10 hogue
* Initial Revision
*
*
* ==========================================================================
*/
/*****************************************************************************
*
* mmdbapi4.h
*
* UNDER CONSTRUCTION NOTICE.
* EVERYTHING SUBJECT TO RADICAL CHANGES!
*
* programmer C.W.V. Hogue
* created: 18 Oct 95
* last mod:
*****************************************************************************/
#ifndef _MMDBAPI4_
#define _MMDBAPI4_
#ifdef __cplusplus
extern "C" {
#endif
/* bSave Byte for WriteASN functions */
/* use these to subset portions of the in-memory structure to save */
#define ANNOT_ONLY 0x80 /* Save Features in Biostruc-annot-set. */
#define DICT_ONLY 0x40 /* Save Local Dictionary in Biostruc-residue-graph-set */
#define NEW_MMDB_ID 0x20 /* assigns a new ID with a hashed-random function */
#define NOT_MODELS 0x04 /* omits all models */
#define NOT_FEATURES 0x02 /* omits all features */
#define SAVE_BINARY 0x01 /* writes ASN.1 binaries */
#define SAVE_ASCII 0x00 /* default - saves all in one ascii file */
#define SAVE_ASCII_STRING "w"
#define SAVE_BINARY_STRING "wb"
#define SAVE_XYZ_SCALE_FACTOR 1000.0
#define DICT_STANDARD_STRING "Standard residue dictionary"
#define DICT_STANDARD_ID 1
Boolean LIBCALL RefreshSurface(SurfaceCoordinatesPtr pscThis, PMOD pmodThis);
void LIBCALL FreeRedundantAsn(PDNMS pdnmsThis);
Boolean LIBCALL RefreshModelAsnMem(PDNMS pdnmsThis, Int2 iModel);
Boolean LIBCALL RebuildChemGraphAsn(PDNMS pdnmsThis);
Boolean LIBCALL WriteOutBiostruc(BiostrucPtr pbsThis, CharPtr pcSave, Byte bSave);
Boolean LIBCALL WriteAsnChemGraphOnly(PDNMS pdnmsThis, CharPtr pcSave, Byte bSave);
Boolean LIBCALL WriteAsnLocalDict(PDNMS pdnmsThis, CharPtr pcSave, Byte bSave,
Boolean SaveId);
Boolean LIBCALL FreeSingleModel(PDNMS pdnmsThis, Int2 iModel);
Boolean LIBCALL WriteAsnModelList(PDNMS pdnmsThis, Int2 iNumModels, Int2Ptr i2Vec,
CharPtr pcSave, Byte bSave, Boolean iCn3d);
Boolean LIBCALL WriteAsnOneModel(PDNMS pdnmsThis, Int2 iModel, CharPtr pcSave,
Byte bSave);
Boolean LIBCALL WriteAsnAllModel(PDNMS pdnmsThis, CharPtr pcSave, Byte bSave);
Boolean LIBCALL WriteASNChemGraphOnly(PDNMS pdnmsThis, CharPtr pcSave, Byte bSave);
SeqIdPtr MakePDBSeqId2 (CharPtr pcPDB, Char cChain, int iDomain, Boolean getgi);
SeqAnnotPtr LIBCALL BiostrucAnnotSetToSeqAnnot(BiostrucAnnotSetPtr set, Boolean usePValue);
#ifdef __cplusplus
}
#endif
#endif
/* Minimum allowed ASN.1 ver 4.1 Biostruc...
* Biostruc ::= {
* id {
* mmdb-id 0 } ,
* chemical-graph {
* molecule-graphs {
* {
* id 1 ,
* residue-sequence {
* {
* id 1 ,
* residue-graph
* local 1 } } } } ,
* residue-graphs {
* {
* id 1 ,
* atoms {
* {
* id 1 ,
* element unknown } } ,
* bonds {
* } } } } }
*/
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