/usr/include/ncbi/objmacro.h is in libncbi6-dev 6.1.20120620-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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#define _objmacro_
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
#ifdef __cplusplus
extern "C" { /* } */
#endif
/**************************************************
*
* Generated objects for Module NCBI-Macro
* Generated using ASNCODE Revision: 6.19 at Jun 6, 2012 10:06 AM
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
objmacroAsnLoad PROTO((void));
/**************************************************
*
* AECRAction
*
**************************************************/
typedef struct struct_AECR_action {
ValNodePtr action;
Uint1 also_change_mrna;
ValNodePtr constraint;
} AECRAction, PNTR AECRActionPtr;
NLM_EXTERN AECRActionPtr LIBCALL AECRActionFree PROTO ((AECRActionPtr ));
NLM_EXTERN AECRActionPtr LIBCALL AECRActionNew PROTO (( void ));
NLM_EXTERN AECRActionPtr LIBCALL AECRActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AECRActionAsnWrite PROTO (( AECRActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ParseAction
*
**************************************************/
typedef struct struct_Parse_action {
struct struct_Text_portion PNTR portion;
ValNodePtr src;
ValNodePtr dest;
Uint2 capitalization;
Uint1 remove_from_parsed;
ValNodePtr transform;
Uint2 existing_text;
} ParseAction, PNTR ParseActionPtr;
NLM_EXTERN ParseActionPtr LIBCALL ParseActionFree PROTO ((ParseActionPtr ));
NLM_EXTERN ParseActionPtr LIBCALL ParseActionNew PROTO (( void ));
NLM_EXTERN ParseActionPtr LIBCALL ParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseActionAsnWrite PROTO (( ParseActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MacroActionList
*
**************************************************/
typedef ValNode MacroActionList;
typedef ValNodePtr MacroActionListPtr;
#define MacroActionListNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListFree PROTO ((MacroActionListPtr ));
NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListNew PROTO (( void ));
NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MacroActionListAsnWrite PROTO (( MacroActionListPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* SuspectRuleSet
*
**************************************************/
typedef struct struct_Suspect_rule SuspectRuleSet;
typedef struct struct_Suspect_rule PNTR SuspectRuleSetPtr;
#define SuspectRuleSetNew() Suspect_ruleNew()
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetFree PROTO ((SuspectRuleSetPtr ));
NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetNew PROTO (( void ));
NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SuspectRuleSetAsnWrite PROTO (( SuspectRuleSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/* following #defines are for enumerated type, not used by object loaders */
#define String_location_contains 1
#define String_location_equals 2
#define String_location_starts 3
#define String_location_ends 4
#define String_location_inlist 5
/**************************************************
*
* WordSubstitution
*
**************************************************/
typedef struct struct_Word_substitution {
struct struct_Word_substitution PNTR next;
CharPtr word;
ValNodePtr synonyms;
Uint1 case_sensitive;
Uint1 whole_word;
} WordSubstitution, PNTR WordSubstitutionPtr;
NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionFree PROTO ((WordSubstitutionPtr ));
NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionNew PROTO (( void ));
NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL WordSubstitutionAsnWrite PROTO (( WordSubstitutionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* WordSubstitutionSet
*
**************************************************/
typedef struct struct_Word_substitution WordSubstitutionSet;
typedef struct struct_Word_substitution PNTR WordSubstitutionSetPtr;
#define WordSubstitutionSetNew() Word_substitutionNew()
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetFree PROTO ((WordSubstitutionSetPtr ));
NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetNew PROTO (( void ));
NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL WordSubstitutionSetAsnWrite PROTO (( WordSubstitutionSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* StringConstraint
*
**************************************************/
typedef struct struct_String_constraint {
struct struct_String_constraint PNTR next;
CharPtr match_text;
Uint2 match_location;
Uint1 case_sensitive;
Uint1 ignore_space;
Uint1 ignore_punct;
struct struct_Word_substitution PNTR ignore_words;
Uint1 whole_word;
Uint1 not_present;
Uint1 is_all_caps;
Uint1 is_all_lower;
Uint1 is_all_punct;
Uint1 ignore_weasel;
} StringConstraint, PNTR StringConstraintPtr;
NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintFree PROTO ((StringConstraintPtr ));
NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintNew PROTO (( void ));
NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StringConstraintAsnWrite PROTO (( StringConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* StringConstraintSet
*
**************************************************/
typedef struct struct_String_constraint StringConstraintSet;
typedef struct struct_String_constraint PNTR StringConstraintSetPtr;
#define StringConstraintSetNew() String_constraintNew()
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetFree PROTO ((StringConstraintSetPtr ));
NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetNew PROTO (( void ));
NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StringConstraintSetAsnWrite PROTO (( StringConstraintSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/* following #defines are for enumerated type, not used by object loaders */
#define Strand_constraint_any 0
#define Strand_constraint_plus 1
#define Strand_constraint_minus 2
/* following #defines are for enumerated type, not used by object loaders */
#define Seqtype_constraint_any 0
#define Seqtype_constraint_nuc 1
#define Seqtype_constraint_prot 2
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_constraint_either 0
#define Partial_constraint_partial 1
#define Partial_constraint_complete 2
/* following #defines are for enumerated type, not used by object loaders */
#define Location_type_constraint_any 0
#define Location_type_constraint_single_interval 1
#define Location_type_constraint_joined 2
#define Location_type_constraint_ordered 3
typedef ValNodePtr LocationPosConstraintPtr;
typedef ValNode LocationPosConstraint;
#define LocationPosConstraint_dist_from_end 1
#define LocationPosConstraint_max_dist_from_end 2
#define LocationPosConstraint_min_dist_from_end 3
NLM_EXTERN LocationPosConstraintPtr LIBCALL LocationPosConstraintFree PROTO ((LocationPosConstraintPtr ));
NLM_EXTERN LocationPosConstraintPtr LIBCALL LocationPosConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationPosConstraintAsnWrite PROTO (( LocationPosConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* LocationConstraint
*
**************************************************/
typedef struct struct_Location_constraint {
Uint2 strand;
Uint2 seq_type;
Uint2 partial5;
Uint2 partial3;
Uint2 location_type;
ValNodePtr end5;
ValNodePtr end3;
} LocationConstraint, PNTR LocationConstraintPtr;
NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintFree PROTO ((LocationConstraintPtr ));
NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintNew PROTO (( void ));
NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationConstraintAsnWrite PROTO (( LocationConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Object_type_constraint_any 0
#define Object_type_constraint_feature 1
#define Object_type_constraint_descriptor 2
/* following #defines are for enumerated type, not used by object loaders */
#define Macro_feature_type_any 0
#define Macro_feature_type_gene 1
#define Macro_feature_type_org 2
#define Macro_feature_type_cds 3
#define Macro_feature_type_prot 4
#define Macro_feature_type_preRNA 5
#define Macro_feature_type_mRNA 6
#define Macro_feature_type_tRNA 7
#define Macro_feature_type_rRNA 8
#define Macro_feature_type_snRNA 9
#define Macro_feature_type_scRNA 10
#define Macro_feature_type_otherRNA 11
#define Macro_feature_type_pub 12
#define Macro_feature_type_seq 13
#define Macro_feature_type_imp 14
#define Macro_feature_type_allele 15
#define Macro_feature_type_attenuator 16
#define Macro_feature_type_c_region 17
#define Macro_feature_type_caat_signal 18
#define Macro_feature_type_imp_CDS 19
#define Macro_feature_type_conflict 20
#define Macro_feature_type_d_loop 21
#define Macro_feature_type_d_segment 22
#define Macro_feature_type_enhancer 23
#define Macro_feature_type_exon 24
#define Macro_feature_type_gC_signal 25
#define Macro_feature_type_iDNA 26
#define Macro_feature_type_intron 27
#define Macro_feature_type_j_segment 28
#define Macro_feature_type_ltr 29
#define Macro_feature_type_mat_peptide 30
#define Macro_feature_type_misc_binding 31
#define Macro_feature_type_misc_difference 32
#define Macro_feature_type_misc_feature 33
#define Macro_feature_type_misc_recomb 34
#define Macro_feature_type_misc_RNA 35
#define Macro_feature_type_misc_signal 36
#define Macro_feature_type_misc_structure 37
#define Macro_feature_type_modified_base 38
#define Macro_feature_type_mutation 39
#define Macro_feature_type_n_region 40
#define Macro_feature_type_old_sequence 41
#define Macro_feature_type_polyA_signal 42
#define Macro_feature_type_polyA_site 43
#define Macro_feature_type_precursor_RNA 44
#define Macro_feature_type_prim_transcript 45
#define Macro_feature_type_primer_bind 46
#define Macro_feature_type_promoter 47
#define Macro_feature_type_protein_bind 48
#define Macro_feature_type_rbs 49
#define Macro_feature_type_repeat_region 50
#define Macro_feature_type_rep_origin 51
#define Macro_feature_type_s_region 52
#define Macro_feature_type_sig_peptide 53
#define Macro_feature_type_source 54
#define Macro_feature_type_stem_loop 55
#define Macro_feature_type_sts 56
#define Macro_feature_type_tata_signal 57
#define Macro_feature_type_terminator 58
#define Macro_feature_type_transit_peptide 59
#define Macro_feature_type_unsure 60
#define Macro_feature_type_v_region 61
#define Macro_feature_type_v_segment 62
#define Macro_feature_type_variation 63
#define Macro_feature_type_virion 64
#define Macro_feature_type_n3clip 65
#define Macro_feature_type_n3UTR 66
#define Macro_feature_type_n5clip 67
#define Macro_feature_type_n5UTR 68
#define Macro_feature_type_n10_signal 69
#define Macro_feature_type_n35_signal 70
#define Macro_feature_type_site_ref 71
#define Macro_feature_type_region 72
#define Macro_feature_type_comment 73
#define Macro_feature_type_bond 74
#define Macro_feature_type_site 75
#define Macro_feature_type_rsite 76
#define Macro_feature_type_user 77
#define Macro_feature_type_txinit 78
#define Macro_feature_type_num 79
#define Macro_feature_type_psec_str 80
#define Macro_feature_type_non_std_residue 81
#define Macro_feature_type_het 82
#define Macro_feature_type_biosrc 83
#define Macro_feature_type_preprotein 84
#define Macro_feature_type_mat_peptide_aa 85
#define Macro_feature_type_sig_peptide_aa 86
#define Macro_feature_type_transit_peptide_aa 87
#define Macro_feature_type_snoRNA 88
#define Macro_feature_type_gap 89
#define Macro_feature_type_operon 90
#define Macro_feature_type_oriT 91
#define Macro_feature_type_ncRNA 92
#define Macro_feature_type_tmRNA 93
#define Macro_feature_type_mobile_element 94
/* following #defines are for enumerated type, not used by object loaders */
#define Feat_qual_legal_allele 1
#define Feat_qual_legal_activity 2
#define Feat_qual_legal_anticodon 3
#define Feat_qual_legal_bound_moiety 4
#define Feat_qual_legal_chromosome 5
#define Feat_qual_legal_citation 6
#define Feat_qual_legal_codon 7
#define Feat_qual_legal_codon_start 8
#define Feat_qual_legal_codons_recognized 9
#define Feat_qual_legal_compare 10
#define Feat_qual_legal_cons_splice 11
#define Feat_qual_legal_db_xref 12
#define Feat_qual_legal_description 13
#define Feat_qual_legal_direction 14
#define Feat_qual_legal_ec_number 15
#define Feat_qual_legal_environmental_sample 16
#define Feat_qual_legal_evidence 17
#define Feat_qual_legal_exception 18
#define Feat_qual_legal_experiment 19
#define Feat_qual_legal_focus 20
#define Feat_qual_legal_frequency 21
#define Feat_qual_legal_function 22
#define Feat_qual_legal_gene 23
#define Feat_qual_legal_gene_description 24
#define Feat_qual_legal_inference 25
#define Feat_qual_legal_label 26
#define Feat_qual_legal_locus_tag 27
#define Feat_qual_legal_map 28
#define Feat_qual_legal_mobile_element 29
#define Feat_qual_legal_mod_base 30
#define Feat_qual_legal_mol_type 31
#define Feat_qual_legal_ncRNA_class 32
#define Feat_qual_legal_note 33
#define Feat_qual_legal_number 34
#define Feat_qual_legal_old_locus_tag 35
#define Feat_qual_legal_operon 36
#define Feat_qual_legal_organism 37
#define Feat_qual_legal_organelle 38
#define Feat_qual_legal_partial 39
#define Feat_qual_legal_phenotype 40
#define Feat_qual_legal_plasmid 41
#define Feat_qual_legal_product 42
#define Feat_qual_legal_protein_id 43
#define Feat_qual_legal_pseudo 44
#define Feat_qual_legal_rearranged 45
#define Feat_qual_legal_replace 46
#define Feat_qual_legal_rpt_family 47
#define Feat_qual_legal_rpt_type 48
#define Feat_qual_legal_rpt_unit 49
#define Feat_qual_legal_rpt_unit_seq 50
#define Feat_qual_legal_rpt_unit_range 51
#define Feat_qual_legal_segment 52
#define Feat_qual_legal_sequenced_mol 53
#define Feat_qual_legal_standard_name 54
#define Feat_qual_legal_synonym 55
#define Feat_qual_legal_transcript_id 56
#define Feat_qual_legal_transgenic 57
#define Feat_qual_legal_translation 58
#define Feat_qual_legal_transl_except 59
#define Feat_qual_legal_transl_table 60
#define Feat_qual_legal_usedin 61
#define Feat_qual_legal_mobile_element_type 62
#define Feat_qual_legal_mobile_element_name 63
#define Feat_qual_legal_gene_comment 64
#define Feat_qual_legal_satellite 65
#define Feat_qual_legal_satellite_type 66
#define Feat_qual_legal_satellite_name 67
#define Feat_qual_legal_location 68
#define Feat_qual_legal_tag_peptide 69
#define Feat_qual_legal_mobile_element_type_type 70
#define Feat_qual_legal_name 71
/**************************************************
*
* FeatQualLegalVal
*
**************************************************/
typedef struct struct_Feat_qual_legal_val {
Uint2 qual;
CharPtr val;
} FeatQualLegalVal, PNTR FeatQualLegalValPtr;
NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValFree PROTO ((FeatQualLegalValPtr ));
NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValNew PROTO (( void ));
NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualLegalValAsnWrite PROTO (( FeatQualLegalValPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FeatQualLegalValChoicePtr;
typedef ValNode FeatQualLegalValChoice;
#define FeatQualLegalValChoice_qual 1
NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceFree PROTO ((FeatQualLegalValChoicePtr ));
NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualLegalValChoiceAsnWrite PROTO (( FeatQualLegalValChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatQualLegalSet
*
**************************************************/
typedef ValNode FeatQualLegalSet;
typedef ValNodePtr FeatQualLegalSetPtr;
#define FeatQualLegalSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetFree PROTO ((FeatQualLegalSetPtr ));
NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetNew PROTO (( void ));
NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualLegalSetAsnWrite PROTO (( FeatQualLegalSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
typedef ValNodePtr FeatQualChoicePtr;
typedef ValNode FeatQualChoice;
#define FeatQualChoice_legal_qual 1
#define FeatQualChoice_illegal_qual 2
NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceFree PROTO ((FeatQualChoicePtr ));
NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualChoiceAsnWrite PROTO (( FeatQualChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatureField
*
**************************************************/
typedef struct struct_Feature_field {
Uint2 type;
ValNodePtr field;
} FeatureField, PNTR FeatureFieldPtr;
NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldFree PROTO ((FeatureFieldPtr ));
NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldNew PROTO (( void ));
NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatureFieldAsnWrite PROTO (( FeatureFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatureFieldLegal
*
**************************************************/
typedef struct struct_Feature_field_legal {
Uint2 type;
Uint2 field;
} FeatureFieldLegal, PNTR FeatureFieldLegalPtr;
NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalFree PROTO ((FeatureFieldLegalPtr ));
NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalNew PROTO (( void ));
NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatureFieldLegalAsnWrite PROTO (( FeatureFieldLegalPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatureFieldPair
*
**************************************************/
typedef struct struct_Feature_field_pair {
Uint2 type;
ValNodePtr field_from;
ValNodePtr field_to;
} FeatureFieldPair, PNTR FeatureFieldPairPtr;
NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairFree PROTO ((FeatureFieldPairPtr ));
NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairNew PROTO (( void ));
NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatureFieldPairAsnWrite PROTO (( FeatureFieldPairPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr RnaFeatTypePtr;
typedef ValNode RnaFeatType;
#define RnaFeatType_any 1
#define RnaFeatType_preRNA 2
#define RnaFeatType_mRNA 3
#define RnaFeatType_tRNA 4
#define RnaFeatType_rRNA 5
#define RnaFeatType_ncRNA 6
#define RnaFeatType_tmRNA 7
#define RnaFeatType_miscRNA 8
NLM_EXTERN RnaFeatTypePtr LIBCALL RnaFeatTypeFree PROTO ((RnaFeatTypePtr ));
NLM_EXTERN RnaFeatTypePtr LIBCALL RnaFeatTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RnaFeatTypeAsnWrite PROTO (( RnaFeatTypePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Rna_field_product 1
#define Rna_field_comment 2
#define Rna_field_codons_recognized 3
#define Rna_field_ncrna_class 4
#define Rna_field_anticodon 5
#define Rna_field_transcript_id 6
#define Rna_field_gene_locus 7
#define Rna_field_gene_description 8
#define Rna_field_gene_maploc 9
#define Rna_field_gene_locus_tag 10
#define Rna_field_gene_synonym 11
#define Rna_field_gene_comment 12
#define Rna_field_tag_peptide 13
/**************************************************
*
* RnaQual
*
**************************************************/
typedef struct struct_Rna_qual {
ValNodePtr type;
Uint2 field;
} RnaQual, PNTR RnaQualPtr;
NLM_EXTERN RnaQualPtr LIBCALL RnaQualFree PROTO ((RnaQualPtr ));
NLM_EXTERN RnaQualPtr LIBCALL RnaQualNew PROTO (( void ));
NLM_EXTERN RnaQualPtr LIBCALL RnaQualAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RnaQualAsnWrite PROTO (( RnaQualPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RnaQualPair
*
**************************************************/
typedef struct struct_Rna_qual_pair {
ValNodePtr type;
Uint2 field_from;
Uint2 field_to;
} RnaQualPair, PNTR RnaQualPairPtr;
NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairFree PROTO ((RnaQualPairPtr ));
NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairNew PROTO (( void ));
NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RnaQualPairAsnWrite PROTO (( RnaQualPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Source_qual_acronym 1
#define Source_qual_anamorph 2
#define Source_qual_authority 3
#define Source_qual_bio_material 4
#define Source_qual_biotype 5
#define Source_qual_biovar 6
#define Source_qual_breed 7
#define Source_qual_cell_line 8
#define Source_qual_cell_type 9
#define Source_qual_chemovar 10
#define Source_qual_chromosome 11
#define Source_qual_clone 12
#define Source_qual_clone_lib 13
#define Source_qual_collected_by 14
#define Source_qual_collection_date 15
#define Source_qual_common 16
#define Source_qual_common_name 17
#define Source_qual_country 18
#define Source_qual_cultivar 19
#define Source_qual_culture_collection 20
#define Source_qual_dev_stage 21
#define Source_qual_division 22
#define Source_qual_dosage 23
#define Source_qual_ecotype 24
#define Source_qual_endogenous_virus_name 25
#define Source_qual_environmental_sample 26
#define Source_qual_forma 27
#define Source_qual_forma_specialis 28
#define Source_qual_frequency 29
#define Source_qual_fwd_primer_name 30
#define Source_qual_fwd_primer_seq 31
#define Source_qual_gb_acronym 32
#define Source_qual_gb_anamorph 33
#define Source_qual_gb_synonym 34
#define Source_qual_genotype 35
#define Source_qual_germline 36
#define Source_qual_group 37
#define Source_qual_haplotype 38
#define Source_qual_identified_by 39
#define Source_qual_insertion_seq_name 40
#define Source_qual_isolate 41
#define Source_qual_isolation_source 42
#define Source_qual_lab_host 43
#define Source_qual_lat_lon 44
#define Source_qual_lineage 45
#define Source_qual_map 46
#define Source_qual_metagenome_source 47
#define Source_qual_metagenomic 48
#define Source_qual_old_lineage 49
#define Source_qual_old_name 50
#define Source_qual_orgmod_note 51
#define Source_qual_nat_host 52
#define Source_qual_pathovar 53
#define Source_qual_plasmid_name 54
#define Source_qual_plastid_name 55
#define Source_qual_pop_variant 56
#define Source_qual_rearranged 57
#define Source_qual_rev_primer_name 58
#define Source_qual_rev_primer_seq 59
#define Source_qual_segment 60
#define Source_qual_serogroup 61
#define Source_qual_serotype 62
#define Source_qual_serovar 63
#define Source_qual_sex 64
#define Source_qual_specimen_voucher 65
#define Source_qual_strain 66
#define Source_qual_subclone 67
#define Source_qual_subgroup 68
#define Source_qual_subsource_note 69
#define Source_qual_sub_species 70
#define Source_qual_substrain 71
#define Source_qual_subtype 72
#define Source_qual_synonym 73
#define Source_qual_taxname 74
#define Source_qual_teleomorph 75
#define Source_qual_tissue_lib 76
#define Source_qual_tissue_type 77
#define Source_qual_transgenic 78
#define Source_qual_transposon_name 79
#define Source_qual_type 80
#define Source_qual_variety 81
#define Source_qual_specimen_voucher_INST 82
#define Source_qual_specimen_voucher_COLL 83
#define Source_qual_specimen_voucher_SpecID 84
#define Source_qual_culture_collection_INST 85
#define Source_qual_culture_collection_COLL 86
#define Source_qual_culture_collection_SpecID 87
#define Source_qual_bio_material_INST 88
#define Source_qual_bio_material_COLL 89
#define Source_qual_bio_material_SpecID 90
#define Source_qual_all_notes 91
#define Source_qual_mating_type 92
#define Source_qual_linkage_group 93
#define Source_qual_haplogroup 94
#define Source_qual_all_quals 95
#define Source_qual_dbxref 96
#define Source_qual_taxid 97
/**************************************************
*
* SourceQualPair
*
**************************************************/
typedef struct struct_Source_qual_pair {
Uint2 field_from;
Uint2 field_to;
} SourceQualPair, PNTR SourceQualPairPtr;
NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairFree PROTO ((SourceQualPairPtr ));
NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairNew PROTO (( void ));
NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualPairAsnWrite PROTO (( SourceQualPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Source_location_unknown 0
#define Source_location_genomic 1
#define Source_location_chloroplast 2
#define Source_location_chromoplast 3
#define Source_location_kinetoplast 4
#define Source_location_mitochondrion 5
#define Source_location_plastid 6
#define Source_location_macronuclear 7
#define Source_location_extrachrom 8
#define Source_location_plasmid 9
#define Source_location_transposon 10
#define Source_location_insertion_seq 11
#define Source_location_cyanelle 12
#define Source_location_proviral 13
#define Source_location_virion 14
#define Source_location_nucleomorph 15
#define Source_location_apicoplast 16
#define Source_location_leucoplast 17
#define Source_location_proplastid 18
#define Source_location_endogenous_virus 19
#define Source_location_hydrogenosome 20
#define Source_location_chromosome 21
#define Source_location_chromatophore 22
/* following #defines are for enumerated type, not used by object loaders */
#define Source_origin_unknown 0
#define Source_origin_natural 1
#define Source_origin_natmut 2
#define Source_origin_mut 3
#define Source_origin_artificial 4
#define Source_origin_synthetic 5
#define Source_origin_other 255
typedef ValNodePtr SourceQualChoicePtr;
typedef ValNode SourceQualChoice;
#define SourceQualChoice_textqual 1
#define SourceQualChoice_location 2
#define SourceQualChoice_origin 3
#define SourceQualChoice_gcode 4
#define SourceQualChoice_mgcode 5
NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceFree PROTO ((SourceQualChoicePtr ));
NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualChoiceAsnWrite PROTO (( SourceQualChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SourceQualTextVal
*
**************************************************/
typedef struct struct_Source_qual_text_val {
Uint2 srcqual;
CharPtr val;
} SourceQualTextVal, PNTR SourceQualTextValPtr;
NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValFree PROTO ((SourceQualTextValPtr ));
NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValNew PROTO (( void ));
NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualTextValAsnWrite PROTO (( SourceQualTextValPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr SourceQualValChoicePtr;
typedef ValNode SourceQualValChoice;
#define SourceQualValChoice_textqual 1
#define SourceQualValChoice_location 2
#define SourceQualValChoice_origin 3
#define SourceQualValChoice_gcode 4
#define SourceQualValChoice_mgcode 5
NLM_EXTERN SourceQualValChoicePtr LIBCALL SourceQualValChoiceFree PROTO ((SourceQualValChoicePtr ));
NLM_EXTERN SourceQualValChoicePtr LIBCALL SourceQualValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualValChoiceAsnWrite PROTO (( SourceQualValChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SourceQualValSet
*
**************************************************/
typedef ValNode SourceQualValSet;
typedef ValNodePtr SourceQualValSetPtr;
#define SourceQualValSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetFree PROTO ((SourceQualValSetPtr ));
NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetNew PROTO (( void ));
NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualValSetAsnWrite PROTO (( SourceQualValSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/* following #defines are for enumerated type, not used by object loaders */
#define CDSGeneProt_field_cds_comment 1
#define CDSGeneProt_field_gene_locus 2
#define CDSGeneProt_field_gene_description 3
#define CDSGeneProt_field_gene_comment 4
#define CDSGeneProt_field_gene_allele 5
#define CDSGeneProt_field_gene_maploc 6
#define CDSGeneProt_field_gene_locus_tag 7
#define CDSGeneProt_field_gene_synonym 8
#define CDSGeneProt_field_gene_old_locus_tag 9
#define CDSGeneProt_field_mrna_product 10
#define CDSGeneProt_field_mrna_comment 11
#define CDSGeneProt_field_prot_name 12
#define CDSGeneProt_field_prot_description 13
#define CDSGeneProt_field_prot_ec_number 14
#define CDSGeneProt_field_prot_activity 15
#define CDSGeneProt_field_prot_comment 16
#define CDSGeneProt_field_mat_peptide_name 17
#define CDSGeneProt_field_mat_peptide_description 18
#define CDSGeneProt_field_mat_peptide_ec_number 19
#define CDSGeneProt_field_mat_peptide_activity 20
#define CDSGeneProt_field_mat_peptide_comment 21
#define CDSGeneProt_field_cds_inference 22
#define CDSGeneProt_field_gene_inference 23
#define CDSGeneProt_field_codon_start 24
/**************************************************
*
* CDSGeneProtFieldPair
*
**************************************************/
typedef struct struct_CDSGeneProt_field_pair {
Uint2 field_from;
Uint2 field_to;
} CDSGeneProtFieldPair, PNTR CDSGeneProtFieldPairPtr;
NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairFree PROTO ((CDSGeneProtFieldPairPtr ));
NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairNew PROTO (( void ));
NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtFieldPairAsnWrite PROTO (( CDSGeneProtFieldPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Molecule_type_unknown 0
#define Molecule_type_genomic 1
#define Molecule_type_precursor_RNA 2
#define Molecule_type_mRNA 3
#define Molecule_type_rRNA 4
#define Molecule_type_tRNA 5
#define Molecule_type_genomic_mRNA 6
#define Molecule_type_cRNA 7
#define Molecule_type_transcribed_RNA 8
#define Molecule_type_ncRNA 9
#define Molecule_type_transfer_messenger_RNA 10
#define Molecule_type_macro_other 11
/* following #defines are for enumerated type, not used by object loaders */
#define Technique_type_unknown 0
#define Technique_type_standard 1
#define Technique_type_est 2
#define Technique_type_sts 3
#define Technique_type_survey 4
#define Technique_type_genetic_map 5
#define Technique_type_physical_map 6
#define Technique_type_derived 7
#define Technique_type_concept_trans 8
#define Technique_type_seq_pept 9
#define Technique_type_both 10
#define Technique_type_seq_pept_overlap 11
#define Technique_type_seq_pept_homol 12
#define Technique_type_concept_trans_a 13
#define Technique_type_htgs_1 14
#define Technique_type_htgs_2 15
#define Technique_type_htgs_3 16
#define Technique_type_fli_cDNA 17
#define Technique_type_htgs_0 18
#define Technique_type_htc 19
#define Technique_type_wgs 20
#define Technique_type_barcode 21
#define Technique_type_composite_wgs_htgs 22
#define Technique_type_tsa 23
#define Technique_type_other 24
/* following #defines are for enumerated type, not used by object loaders */
#define Completedness_type_unknown 0
#define Completedness_type_complete 1
#define Completedness_type_partial 2
#define Completedness_type_no_left 3
#define Completedness_type_no_right 4
#define Completedness_type_no_ends 5
#define Completedness_type_has_left 6
#define Completedness_type_has_right 7
#define Completedness_type_other 6
/* following #defines are for enumerated type, not used by object loaders */
#define Molecule_class_type_unknown 0
#define Molecule_class_type_dna 1
#define Molecule_class_type_rna 2
#define Molecule_class_type_protein 3
#define Molecule_class_type_nucleotide 4
#define Molecule_class_type_other 5
/* following #defines are for enumerated type, not used by object loaders */
#define Topology_type_unknown 0
#define Topology_type_linear 1
#define Topology_type_circular 2
#define Topology_type_tandem 3
#define Topology_type_other 4
/* following #defines are for enumerated type, not used by object loaders */
#define Strand_type_unknown 0
#define Strand_type_single 1
#define Strand_type_double__ 2
#define Strand_type_mixed 3
#define Strand_type_mixed_rev 4
#define Strand_type_other 5
typedef ValNodePtr MolinfoFieldPtr;
typedef ValNode MolinfoField;
#define MolinfoField_molecule 1
#define MolinfoField_technique 2
#define MolinfoField_completedness 3
#define MolinfoField_mol_class 4
#define MolinfoField_topology 5
#define MolinfoField_strand 6
NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldFree PROTO ((MolinfoFieldPtr ));
NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldAsnWrite PROTO (( MolinfoFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoMoleculePair
*
**************************************************/
typedef struct struct_Molinfo_molecule_pair {
Uint2 from;
Uint2 to;
} MolinfoMoleculePair, PNTR MolinfoMoleculePairPtr;
NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairFree PROTO ((MolinfoMoleculePairPtr ));
NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairNew PROTO (( void ));
NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoMoleculePairAsnWrite PROTO (( MolinfoMoleculePairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoTechniquePair
*
**************************************************/
typedef struct struct_Molinfo_technique_pair {
Uint2 from;
Uint2 to;
} MolinfoTechniquePair, PNTR MolinfoTechniquePairPtr;
NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairFree PROTO ((MolinfoTechniquePairPtr ));
NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairNew PROTO (( void ));
NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoTechniquePairAsnWrite PROTO (( MolinfoTechniquePairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoCompletednessPair
*
**************************************************/
typedef struct struct_Molinfo_completedness_pair {
Uint2 from;
Uint2 to;
} MolinfoCompletednessPair, PNTR MolinfoCompletednessPairPtr;
NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairFree PROTO ((MolinfoCompletednessPairPtr ));
NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairNew PROTO (( void ));
NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoCompletednessPairAsnWrite PROTO (( MolinfoCompletednessPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoMolClassPair
*
**************************************************/
typedef struct struct_Molinfo_mol_class_pair {
Uint2 from;
Uint2 to;
} MolinfoMolClassPair, PNTR MolinfoMolClassPairPtr;
NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairFree PROTO ((MolinfoMolClassPairPtr ));
NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairNew PROTO (( void ));
NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoMolClassPairAsnWrite PROTO (( MolinfoMolClassPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoTopologyPair
*
**************************************************/
typedef struct struct_Molinfo_topology_pair {
Uint2 from;
Uint2 to;
} MolinfoTopologyPair, PNTR MolinfoTopologyPairPtr;
NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairFree PROTO ((MolinfoTopologyPairPtr ));
NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairNew PROTO (( void ));
NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoTopologyPairAsnWrite PROTO (( MolinfoTopologyPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoStrandPair
*
**************************************************/
typedef struct struct_Molinfo_strand_pair {
Uint2 from;
Uint2 to;
} MolinfoStrandPair, PNTR MolinfoStrandPairPtr;
NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairFree PROTO ((MolinfoStrandPairPtr ));
NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairNew PROTO (( void ));
NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoStrandPairAsnWrite PROTO (( MolinfoStrandPairPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr MolinfoFieldPairPtr;
typedef ValNode MolinfoFieldPair;
#define MolinfoFieldPair_molecule 1
#define MolinfoFieldPair_technique 2
#define MolinfoFieldPair_completedness 3
#define MolinfoFieldPair_mol_class 4
#define MolinfoFieldPair_topology 5
#define MolinfoFieldPair_strand 6
NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairFree PROTO ((MolinfoFieldPairPtr ));
NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldPairAsnWrite PROTO (( MolinfoFieldPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoFieldList
*
**************************************************/
typedef ValNode MolinfoFieldList;
typedef ValNodePtr MolinfoFieldListPtr;
#define MolinfoFieldListNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListFree PROTO ((MolinfoFieldListPtr ));
NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListNew PROTO (( void ));
NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldListAsnWrite PROTO (( MolinfoFieldListPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* MolinfoFieldConstraint
*
**************************************************/
typedef struct struct_Molinfo_field_constraint {
ValNodePtr field;
Uint1 is_not;
} MolinfoFieldConstraint, PNTR MolinfoFieldConstraintPtr;
NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintFree PROTO ((MolinfoFieldConstraintPtr ));
NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintNew PROTO (( void ));
NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldConstraintAsnWrite PROTO (( MolinfoFieldConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Publication_field_cit 1
#define Publication_field_authors 2
#define Publication_field_journal 3
#define Publication_field_volume 4
#define Publication_field_issue 5
#define Publication_field_pages 6
#define Publication_field_date 7
#define Publication_field_serial_number 8
#define Publication_field_title 9
#define Publication_field_affiliation 10
#define Publication_field_affil_div 11
#define Publication_field_affil_city 12
#define Publication_field_affil_sub 13
#define Publication_field_affil_country 14
#define Publication_field_affil_street 15
#define Publication_field_affil_email 16
#define Publication_field_affil_fax 17
#define Publication_field_affil_phone 18
#define Publication_field_affil_zipcode 19
#define Publication_field_authors_initials 20
typedef ValNodePtr StructuredCommentFieldPtr;
typedef ValNode StructuredCommentField;
#define StructuredCommentField_database 1
#define StructuredCommentField_named 2
#define StructuredCommentField_field_name 3
NLM_EXTERN StructuredCommentFieldPtr LIBCALL StructuredCommentFieldFree PROTO ((StructuredCommentFieldPtr ));
NLM_EXTERN StructuredCommentFieldPtr LIBCALL StructuredCommentFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StructuredCommentFieldAsnWrite PROTO (( StructuredCommentFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* StructuredCommentFieldPair
*
**************************************************/
typedef struct struct_Structured_comment_field_pair {
ValNodePtr from;
ValNodePtr to;
} StructuredCommentFieldPair, PNTR StructuredCommentFieldPairPtr;
NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairFree PROTO ((StructuredCommentFieldPairPtr ));
NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairNew PROTO (( void ));
NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StructuredCommentFieldPairAsnWrite PROTO (( StructuredCommentFieldPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Misc_field_genome_project_id 1
#define Misc_field_comment_descriptor 2
#define Misc_field_defline 3
#define Misc_field_keyword 4
/* following #defines are for enumerated type, not used by object loaders */
#define DBLink_field_type_trace_assembly 1
#define DBLink_field_type_bio_sample 2
#define DBLink_field_type_probe_db 3
#define DBLink_field_type_sequence_read_archve 4
#define DBLink_field_type_bio_project 5
/**************************************************
*
* DBLinkFieldPair
*
**************************************************/
typedef struct struct_DBLink_field_pair {
Uint2 from;
Uint2 to;
} DBLinkFieldPair, PNTR DBLinkFieldPairPtr;
NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairFree PROTO ((DBLinkFieldPairPtr ));
NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairNew PROTO (( void ));
NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL DBLinkFieldPairAsnWrite PROTO (( DBLinkFieldPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Pub_type_any 0
#define Pub_type_published 1
#define Pub_type_unpublished 2
#define Pub_type_in_press 3
#define Pub_type_submitter_block 4
/**************************************************
*
* PubFieldConstraint
*
**************************************************/
typedef struct struct_Pub_field_constraint {
Uint2 field;
struct struct_String_constraint PNTR constraint;
} PubFieldConstraint, PNTR PubFieldConstraintPtr;
NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintFree PROTO ((PubFieldConstraintPtr ));
NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintNew PROTO (( void ));
NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PubFieldConstraintAsnWrite PROTO (( PubFieldConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr PubFieldSpecialConstraintTypePtr;
typedef ValNode PubFieldSpecialConstraintType;
#define PubFieldSpecialConstraintType_is_present 1
#define PubFieldSpecialConstraintType_is_not_present 2
#define PubFieldSpecialConstraintType_is_all_caps 3
#define PubFieldSpecialConstraintType_is_all_lower 4
#define PubFieldSpecialConstraintType_is_all_punct 5
NLM_EXTERN PubFieldSpecialConstraintTypePtr LIBCALL PubFieldSpecialConstraintTypeFree PROTO ((PubFieldSpecialConstraintTypePtr ));
NLM_EXTERN PubFieldSpecialConstraintTypePtr LIBCALL PubFieldSpecialConstraintTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PubFieldSpecialConstraintTypeAsnWrite PROTO (( PubFieldSpecialConstraintTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* PubFieldSpecialConstraint
*
**************************************************/
typedef struct struct_Pub_field_special_constraint {
Uint2 field;
ValNodePtr constraint;
} PubFieldSpecialConstraint, PNTR PubFieldSpecialConstraintPtr;
NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintFree PROTO ((PubFieldSpecialConstraintPtr ));
NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintNew PROTO (( void ));
NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PubFieldSpecialConstraintAsnWrite PROTO (( PubFieldSpecialConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* PublicationConstraint
*
**************************************************/
typedef struct struct_Publication_constraint {
Uint2 type;
struct struct_Pub_field_constraint PNTR field;
struct struct_Pub_field_special_constraint PNTR special_field;
} PublicationConstraint, PNTR PublicationConstraintPtr;
NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintFree PROTO ((PublicationConstraintPtr ));
NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintNew PROTO (( void ));
NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PublicationConstraintAsnWrite PROTO (( PublicationConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SourceConstraint
*
**************************************************/
typedef struct struct_Source_constraint {
ValNodePtr field1;
ValNodePtr field2;
struct struct_String_constraint PNTR constraint;
Uint2 type_constraint;
} SourceConstraint, PNTR SourceConstraintPtr;
NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintFree PROTO ((SourceConstraintPtr ));
NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintNew PROTO (( void ));
NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceConstraintAsnWrite PROTO (( SourceConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define CDSGeneProt_feature_type_constraint_gene 1
#define CDSGeneProt_feature_type_constraint_mRNA 2
#define CDSGeneProt_feature_type_constraint_cds 3
#define CDSGeneProt_feature_type_constraint_prot 4
#define CDSGeneProt_feature_type_constraint_exon 5
#define CDSGeneProt_feature_type_constraint_mat_peptide 6
/**************************************************
*
* CDSGeneProtPseudoConstraint
*
**************************************************/
typedef struct struct_CDSGeneProt_pseudo_constraint {
Uint2 feature;
Uint1 is_pseudo;
} CDSGeneProtPseudoConstraint, PNTR CDSGeneProtPseudoConstraintPtr;
NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintFree PROTO ((CDSGeneProtPseudoConstraintPtr ));
NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintNew PROTO (( void ));
NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtPseudoConstraintAsnWrite PROTO (( CDSGeneProtPseudoConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr CDSGeneProtConstraintFieldPtr;
typedef ValNode CDSGeneProtConstraintField;
#define CDSGeneProtConstraintField_field 1
NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldFree PROTO ((CDSGeneProtConstraintFieldPtr ));
NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtConstraintFieldAsnWrite PROTO (( CDSGeneProtConstraintFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* CDSGeneProtQualConstraint
*
**************************************************/
typedef struct struct_CDSGeneProt_qual_constraint {
ValNodePtr field1;
ValNodePtr field2;
struct struct_String_constraint PNTR constraint;
} CDSGeneProtQualConstraint, PNTR CDSGeneProtQualConstraintPtr;
NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintFree PROTO ((CDSGeneProtQualConstraintPtr ));
NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintNew PROTO (( void ));
NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtQualConstraintAsnWrite PROTO (( CDSGeneProtQualConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FieldConstraint
*
**************************************************/
typedef struct struct_Field_constraint {
ValNodePtr field;
struct struct_String_constraint PNTR string_constraint;
} FieldConstraint, PNTR FieldConstraintPtr;
NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintFree PROTO ((FieldConstraintPtr ));
NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintNew PROTO (( void ));
NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldConstraintAsnWrite PROTO (( FieldConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FieldTypePtr;
typedef ValNode FieldType;
#define FieldType_source_qual 1
#define FieldType_feature_field 2
#define FieldType_rna_field 3
#define FieldType_cds_gene_prot 4
#define FieldType_molinfo_field 5
#define FieldType_pub 6
#define FieldType_struc_comment_field 7
#define FieldType_misc 8
#define FieldType_dblink 9
NLM_EXTERN FieldTypePtr LIBCALL FieldTypeFree PROTO ((FieldTypePtr ));
NLM_EXTERN FieldTypePtr LIBCALL FieldTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldTypeAsnWrite PROTO (( FieldTypePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Sequence_constraint_rnamol_any 0
#define Sequence_constraint_rnamol_genomic 1
#define Sequence_constraint_rnamol_precursor_RNA 2
#define Sequence_constraint_rnamol_mRNA 3
#define Sequence_constraint_rnamol_rRNA 4
#define Sequence_constraint_rnamol_tRNA 5
#define Sequence_constraint_rnamol_genomic_mRNA 6
#define Sequence_constraint_rnamol_cRNA 7
#define Sequence_constraint_rnamol_transcribed_RNA 8
#define Sequence_constraint_rnamol_ncRNA 9
#define Sequence_constraint_rnamol_transfer_messenger_RNA 10
typedef ValNodePtr SequenceConstraintMolTypeConstraintPtr;
typedef ValNode SequenceConstraintMolTypeConstraint;
#define SequenceConstraintMolTypeConstraint_any 1
#define SequenceConstraintMolTypeConstraint_nucleotide 2
#define SequenceConstraintMolTypeConstraint_dna 3
#define SequenceConstraintMolTypeConstraint_rna 4
#define SequenceConstraintMolTypeConstraint_protein 5
NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintFree PROTO ((SequenceConstraintMolTypeConstraintPtr ));
NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceConstraintMolTypeConstraintAsnWrite PROTO (( SequenceConstraintMolTypeConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr QuantityConstraintPtr;
typedef ValNode QuantityConstraint;
#define QuantityConstraint_equals 1
#define QuantityConstraint_greater_than 2
#define QuantityConstraint_less_than 3
NLM_EXTERN QuantityConstraintPtr LIBCALL QuantityConstraintFree PROTO ((QuantityConstraintPtr ));
NLM_EXTERN QuantityConstraintPtr LIBCALL QuantityConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL QuantityConstraintAsnWrite PROTO (( QuantityConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Feature_strandedness_constraint_any 0
#define Feature_strandedness_constraint_minus_only 1
#define Feature_strandedness_constraint_plus_only 2
#define Feature_strandedness_constraint_at_least_one_minus 3
#define Feature_strandedness_constraint_at_least_one_plus 4
#define Feature_strandedness_constraint_no_minus 5
#define Feature_strandedness_constraint_no_plus 6
/**************************************************
*
* SequenceConstraint
*
**************************************************/
typedef struct struct_Sequence_constraint {
ValNodePtr seqtype;
struct struct_String_constraint PNTR id;
Uint2 feature;
ValNodePtr num_type_features;
ValNodePtr num_features;
ValNodePtr length;
Uint2 strandedness;
} SequenceConstraint, PNTR SequenceConstraintPtr;
NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintFree PROTO ((SequenceConstraintPtr ));
NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintNew PROTO (( void ));
NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceConstraintAsnWrite PROTO (( SequenceConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Match_type_constraint_dont_care 0
#define Match_type_constraint_yes 1
#define Match_type_constraint_no 2
/**************************************************
*
* TranslationConstraint
*
**************************************************/
typedef struct struct_Translation_constraint {
struct struct_String_constraint PNTR actual_strings;
struct struct_String_constraint PNTR transl_strings;
Uint2 internal_stops;
ValNodePtr num_mismatches;
} TranslationConstraint, PNTR TranslationConstraintPtr;
NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintFree PROTO ((TranslationConstraintPtr ));
NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintNew PROTO (( void ));
NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TranslationConstraintAsnWrite PROTO (( TranslationConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ConstraintChoicePtr;
typedef ValNode ConstraintChoice;
#define ConstraintChoice_string 1
#define ConstraintChoice_location 2
#define ConstraintChoice_field 3
#define ConstraintChoice_source 4
#define ConstraintChoice_cdsgeneprot_qual 5
#define ConstraintChoice_cdsgeneprot_pseudo 6
#define ConstraintChoice_sequence 7
#define ConstraintChoice_pub 8
#define ConstraintChoice_molinfo 9
#define ConstraintChoice_field_missing 10
#define ConstraintChoice_translation 11
NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceFree PROTO ((ConstraintChoicePtr ));
NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConstraintChoiceAsnWrite PROTO (( ConstraintChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ConstraintChoiceSet
*
**************************************************/
typedef ValNode ConstraintChoiceSet;
typedef ValNodePtr ConstraintChoiceSetPtr;
#define ConstraintChoiceSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetFree PROTO ((ConstraintChoiceSetPtr ));
NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetNew PROTO (( void ));
NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConstraintChoiceSetAsnWrite PROTO (( ConstraintChoiceSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
typedef ValNodePtr TextMarkerPtr;
typedef ValNode TextMarker;
#define TextMarker_free_text 1
#define TextMarker_digits 2
#define TextMarker_letters 3
NLM_EXTERN TextMarkerPtr LIBCALL TextMarkerFree PROTO ((TextMarkerPtr ));
NLM_EXTERN TextMarkerPtr LIBCALL TextMarkerAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextMarkerAsnWrite PROTO (( TextMarkerPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* TextPortion
*
**************************************************/
typedef struct struct_Text_portion {
ValNodePtr left_marker;
Uint1 include_left;
ValNodePtr right_marker;
Uint1 include_right;
Uint1 inside;
Uint1 case_sensitive;
Uint1 whole_word;
} TextPortion, PNTR TextPortionPtr;
NLM_EXTERN TextPortionPtr LIBCALL TextPortionFree PROTO ((TextPortionPtr ));
NLM_EXTERN TextPortionPtr LIBCALL TextPortionNew PROTO (( void ));
NLM_EXTERN TextPortionPtr LIBCALL TextPortionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextPortionAsnWrite PROTO (( TextPortionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Field_edit_location_anywhere 0
#define Field_edit_location_beginning 1
#define Field_edit_location_end 2
/**************************************************
*
* FieldEdit
*
**************************************************/
typedef struct struct_Field_edit {
CharPtr find_txt;
CharPtr repl_txt;
Uint2 location;
Uint1 case_insensitive;
} FieldEdit, PNTR FieldEditPtr;
NLM_EXTERN FieldEditPtr LIBCALL FieldEditFree PROTO ((FieldEditPtr ));
NLM_EXTERN FieldEditPtr LIBCALL FieldEditNew PROTO (( void ));
NLM_EXTERN FieldEditPtr LIBCALL FieldEditAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldEditAsnWrite PROTO (( FieldEditPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FieldPairTypePtr;
typedef ValNode FieldPairType;
#define FieldPairType_source_qual 1
#define FieldPairType_feature_field 2
#define FieldPairType_rna_field 3
#define FieldPairType_cds_gene_prot 4
#define FieldPairType_molinfo_field 5
#define FieldPairType_struc_comment_field 6
#define FieldPairType_dblink 7
NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeFree PROTO ((FieldPairTypePtr ));
NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldPairTypeAsnWrite PROTO (( FieldPairTypePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define ExistingTextOption_replace_old 1
#define ExistingTextOption_append_semi 2
#define ExistingTextOption_append_space 3
#define ExistingTextOption_append_colon 4
#define ExistingTextOption_append_comma 5
#define ExistingTextOption_append_none 6
#define ExistingTextOption_prefix_semi 7
#define ExistingTextOption_prefix_space 8
#define ExistingTextOption_prefix_colon 9
#define ExistingTextOption_prefix_comma 10
#define ExistingTextOption_prefix_none 11
#define ExistingTextOption_leave_old 12
#define ExistingTextOption_add_qual 13
/**************************************************
*
* ApplyAction
*
**************************************************/
typedef struct struct_Apply_action {
ValNodePtr field;
CharPtr value;
Uint2 existing_text;
} ApplyAction, PNTR ApplyActionPtr;
NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionFree PROTO ((ApplyActionPtr ));
NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionNew PROTO (( void ));
NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ApplyActionAsnWrite PROTO (( ApplyActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* EditAction
*
**************************************************/
typedef struct struct_Edit_action {
struct struct_Field_edit PNTR edit;
ValNodePtr field;
} EditAction, PNTR EditActionPtr;
NLM_EXTERN EditActionPtr LIBCALL EditActionFree PROTO ((EditActionPtr ));
NLM_EXTERN EditActionPtr LIBCALL EditActionNew PROTO (( void ));
NLM_EXTERN EditActionPtr LIBCALL EditActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL EditActionAsnWrite PROTO (( EditActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Cap_change_none 0
#define Cap_change_tolower 1
#define Cap_change_toupper 2
#define Cap_change_firstcap 3
#define Cap_change_firstcaprestnochange 4
#define Cap_change_firstlower_restnochange 5
#define Cap_change_cap_word_space 6
#define Cap_change_cap_word_space_punc 7
typedef ValNodePtr TextTransformPtr;
typedef ValNode TextTransform;
#define TextTransform_edit 1
#define TextTransform_caps 2
#define TextTransform_remove 3
NLM_EXTERN TextTransformPtr LIBCALL TextTransformFree PROTO ((TextTransformPtr ));
NLM_EXTERN TextTransformPtr LIBCALL TextTransformAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextTransformAsnWrite PROTO (( TextTransformPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* TextTransformSet
*
**************************************************/
typedef ValNode TextTransformSet;
typedef ValNodePtr TextTransformSetPtr;
#define TextTransformSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetFree PROTO ((TextTransformSetPtr ));
NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetNew PROTO (( void ));
NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextTransformSetAsnWrite PROTO (( TextTransformSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* ConvertAction
*
**************************************************/
typedef struct struct_Convert_action {
ValNodePtr fields;
Uint1 strip_name;
Uint1 keep_original;
Uint2 capitalization;
Uint2 existing_text;
} ConvertAction, PNTR ConvertActionPtr;
NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionFree PROTO ((ConvertActionPtr ));
NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionNew PROTO (( void ));
NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertActionAsnWrite PROTO (( ConvertActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* CopyAction
*
**************************************************/
typedef struct struct_Copy_action {
ValNodePtr fields;
Uint2 existing_text;
} CopyAction, PNTR CopyActionPtr;
NLM_EXTERN CopyActionPtr LIBCALL CopyActionFree PROTO ((CopyActionPtr ));
NLM_EXTERN CopyActionPtr LIBCALL CopyActionNew PROTO (( void ));
NLM_EXTERN CopyActionPtr LIBCALL CopyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CopyActionAsnWrite PROTO (( CopyActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SwapAction
*
**************************************************/
typedef struct struct_Swap_action {
ValNodePtr fields;
ValNodePtr field_to;
} SwapAction, PNTR SwapActionPtr;
NLM_EXTERN SwapActionPtr LIBCALL SwapActionFree PROTO ((SwapActionPtr ));
NLM_EXTERN SwapActionPtr LIBCALL SwapActionNew PROTO (( void ));
NLM_EXTERN SwapActionPtr LIBCALL SwapActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SwapActionAsnWrite PROTO (( SwapActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* AECRParseAction
*
**************************************************/
typedef struct struct_AECRParse_action {
struct struct_Text_portion PNTR portion;
ValNodePtr fields;
Uint1 remove_from_parsed;
Uint1 remove_left;
Uint1 remove_right;
ValNodePtr transform;
Uint2 existing_text;
} AECRParseAction, PNTR AECRParseActionPtr;
NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionFree PROTO ((AECRParseActionPtr ));
NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionNew PROTO (( void ));
NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AECRParseActionAsnWrite PROTO (( AECRParseActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveAction
*
**************************************************/
typedef struct struct_Remove_action {
ValNodePtr field;
} RemoveAction, PNTR RemoveActionPtr;
NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionFree PROTO ((RemoveActionPtr ));
NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionNew PROTO (( void ));
NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveActionAsnWrite PROTO (( RemoveActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveOutsideAction
*
**************************************************/
typedef struct struct_Remove_outside_action {
struct struct_Text_portion PNTR portion;
ValNodePtr field;
Uint1 remove_if_not_found;
} RemoveOutsideAction, PNTR RemoveOutsideActionPtr;
NLM_EXTERN RemoveOutsideActionPtr LIBCALL RemoveOutsideActionFree PROTO ((RemoveOutsideActionPtr ));
NLM_EXTERN RemoveOutsideActionPtr LIBCALL RemoveOutsideActionNew PROTO (( void ));
NLM_EXTERN RemoveOutsideActionPtr LIBCALL RemoveOutsideActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveOutsideActionAsnWrite PROTO (( RemoveOutsideActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ActionChoicePtr;
typedef ValNode ActionChoice;
#define ActionChoice_apply 1
#define ActionChoice_edit 2
#define ActionChoice_convert 3
#define ActionChoice_copy 4
#define ActionChoice_swap 5
#define ActionChoice_remove 6
#define ActionChoice_parse 7
#define ActionChoice_remove_outside 8
NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceFree PROTO ((ActionChoicePtr ));
NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ActionChoiceAsnWrite PROTO (( ActionChoicePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseSrcOrgChoicePtr;
typedef ValNode ParseSrcOrgChoice;
#define ParseSrcOrgChoice_source_qual 1
#define ParseSrcOrgChoice_taxname_after_binomial 2
NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceFree PROTO ((ParseSrcOrgChoicePtr ));
NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcOrgChoiceAsnWrite PROTO (( ParseSrcOrgChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ParseSrcOrg
*
**************************************************/
typedef struct struct_Parse_src_org {
ValNodePtr field;
Uint2 type;
} ParseSrcOrg, PNTR ParseSrcOrgPtr;
NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgFree PROTO ((ParseSrcOrgPtr ));
NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgNew PROTO (( void ));
NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcOrgAsnWrite PROTO (( ParseSrcOrgPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseSrcGeneralIdPtr;
typedef ValNode ParseSrcGeneralId;
#define ParseSrcGeneralId_whole_text 1
#define ParseSrcGeneralId_db 2
#define ParseSrcGeneralId_tag 3
NLM_EXTERN ParseSrcGeneralIdPtr LIBCALL ParseSrcGeneralIdFree PROTO ((ParseSrcGeneralIdPtr ));
NLM_EXTERN ParseSrcGeneralIdPtr LIBCALL ParseSrcGeneralIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcGeneralIdAsnWrite PROTO (( ParseSrcGeneralIdPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseSrcPtr;
typedef ValNode ParseSrc;
#define ParseSrc_defline 1
#define ParseSrc_flatfile 2
#define ParseSrc_local_id 3
#define ParseSrc_org 4
#define ParseSrc_comment 5
#define ParseSrc_bankit_comment 6
#define ParseSrc_structured_comment 7
#define ParseSrc_file_id 8
#define ParseSrc_general_id 9
NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcFree PROTO ((ParseSrcPtr ));
NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcAsnWrite PROTO (( ParseSrcPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ParseDstOrg
*
**************************************************/
typedef struct struct_Parse_dst_org {
ValNodePtr field;
Uint2 type;
} ParseDstOrg, PNTR ParseDstOrgPtr;
NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgFree PROTO ((ParseDstOrgPtr ));
NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgNew PROTO (( void ));
NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseDstOrgAsnWrite PROTO (( ParseDstOrgPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseDestPtr;
typedef ValNode ParseDest;
#define ParseDest_defline 1
#define ParseDest_org 2
#define ParseDest_featqual 3
#define ParseDest_comment_descriptor 4
#define ParseDest_dbxref 5
NLM_EXTERN ParseDestPtr LIBCALL ParseDestFree PROTO ((ParseDestPtr ));
NLM_EXTERN ParseDestPtr LIBCALL ParseDestAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseDestAsnWrite PROTO (( ParseDestPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* LocationInterval
*
**************************************************/
typedef struct struct_Location_interval {
Int4 from;
Int4 to;
} LocationInterval, PNTR LocationIntervalPtr;
NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalFree PROTO ((LocationIntervalPtr ));
NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalNew PROTO (( void ));
NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationIntervalAsnWrite PROTO (( LocationIntervalPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr LocationChoicePtr;
typedef ValNode LocationChoice;
#define LocationChoice_interval 1
#define LocationChoice_whole_sequence 2
#define LocationChoice_point 3
NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceFree PROTO ((LocationChoicePtr ));
NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationChoiceAsnWrite PROTO (( LocationChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SequenceList
*
**************************************************/
typedef ValNode SequenceList;
typedef ValNodePtr SequenceListPtr;
#define SequenceListNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN SequenceListPtr LIBCALL SequenceListFree PROTO ((SequenceListPtr ));
NLM_EXTERN SequenceListPtr LIBCALL SequenceListNew PROTO (( void ));
NLM_EXTERN SequenceListPtr LIBCALL SequenceListAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceListAsnWrite PROTO (( SequenceListPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
typedef ValNodePtr SequenceListChoicePtr;
typedef ValNode SequenceListChoice;
#define SequenceListChoice_list 1
#define SequenceListChoice_all 2
NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceFree PROTO ((SequenceListChoicePtr ));
NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceListChoiceAsnWrite PROTO (( SequenceListChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ApplyFeatureAction
*
**************************************************/
typedef struct struct_Apply_feature_action {
Uint2 type;
Uint1 partial5;
Uint1 partial3;
Uint1 plus_strand;
ValNodePtr location;
ValNodePtr seq_list;
Uint1 add_redundant;
Uint1 add_mrna;
Uint1 apply_to_parts;
Int4 only_seg_num;
ValNodePtr fields;
ValNodePtr src_fields;
} ApplyFeatureAction, PNTR ApplyFeatureActionPtr;
NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionFree PROTO ((ApplyFeatureActionPtr ));
NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionNew PROTO (( void ));
NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ApplyFeatureActionAsnWrite PROTO (( ApplyFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveFeatureAction
*
**************************************************/
typedef struct struct_Remove_feature_action {
Uint2 type;
ValNodePtr constraint;
} RemoveFeatureAction, PNTR RemoveFeatureActionPtr;
NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionFree PROTO ((RemoveFeatureActionPtr ));
NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionNew PROTO (( void ));
NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveFeatureActionAsnWrite PROTO (( RemoveFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ConvertFromCDSOptions
*
**************************************************/
typedef struct struct_Convert_from_CDS_options {
Uint1 remove_mRNA;
Uint1 remove_gene;
Uint1 remove_transcript_id;
} ConvertFromCDSOptions, PNTR ConvertFromCDSOptionsPtr;
NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsFree PROTO ((ConvertFromCDSOptionsPtr ));
NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsNew PROTO (( void ));
NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFromCDSOptionsAsnWrite PROTO (( ConvertFromCDSOptionsPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ConvertFeatureSrcOptionsPtr;
typedef ValNode ConvertFeatureSrcOptions;
#define ConvertFeatureSrcOptions_cds 1
NLM_EXTERN ConvertFeatureSrcOptionsPtr LIBCALL ConvertFeatureSrcOptionsFree PROTO ((ConvertFeatureSrcOptionsPtr ));
NLM_EXTERN ConvertFeatureSrcOptionsPtr LIBCALL ConvertFeatureSrcOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFeatureSrcOptionsAsnWrite PROTO (( ConvertFeatureSrcOptionsPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Bond_type_disulfide 1
#define Bond_type_thioester 2
#define Bond_type_crosslink 3
#define Bond_type_thioether 4
#define Bond_type_other 5
/* following #defines are for enumerated type, not used by object loaders */
#define Site_type_active 1
#define Site_type_binding 2
#define Site_type_cleavage 3
#define Site_type_inhibit 4
#define Site_type_modified 5
#define Site_type_glycosylation 6
#define Site_type_myristoylation 7
#define Site_type_mutagenized 8
#define Site_type_metal_binding 9
#define Site_type_phosphorylation 10
#define Site_type_acetylation 11
#define Site_type_amidation 12
#define Site_type_methylation 13
#define Site_type_hydroxylation 14
#define Site_type_sulfatation 15
#define Site_type_oxidative_deamination 16
#define Site_type_pyrrolidone_carboxylic_acid 17
#define Site_type_gamma_carboxyglutamic_acid 18
#define Site_type_blocked 19
#define Site_type_lipid_binding 20
#define Site_type_np_binding 21
#define Site_type_dna_binding 22
#define Site_type_signal_peptide 23
#define Site_type_transit_peptide 24
#define Site_type_transmembrane_region 25
#define Site_type_nitrosylation 26
#define Site_type_other 27
/**************************************************
*
* RegionType
*
**************************************************/
typedef struct struct_Region_type {
Uint1 create_nucleotide;
} RegionType, PNTR RegionTypePtr;
NLM_EXTERN RegionTypePtr LIBCALL RegionTypeFree PROTO ((RegionTypePtr ));
NLM_EXTERN RegionTypePtr LIBCALL RegionTypeNew PROTO (( void ));
NLM_EXTERN RegionTypePtr LIBCALL RegionTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RegionTypeAsnWrite PROTO (( RegionTypePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ConvertFeatureDstOptionsPtr;
typedef ValNode ConvertFeatureDstOptions;
#define ConvertFeatureDstOptions_bond 1
#define ConvertFeatureDstOptions_site 2
#define ConvertFeatureDstOptions_region 3
#define ConvertFeatureDstOptions_ncrna_class 4
#define ConvertFeatureDstOptions_remove_original 5
NLM_EXTERN ConvertFeatureDstOptionsPtr LIBCALL ConvertFeatureDstOptionsFree PROTO ((ConvertFeatureDstOptionsPtr ));
NLM_EXTERN ConvertFeatureDstOptionsPtr LIBCALL ConvertFeatureDstOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFeatureDstOptionsAsnWrite PROTO (( ConvertFeatureDstOptionsPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ConvertFeatureAction
*
**************************************************/
typedef struct struct_Convert_feature_action {
Uint2 type_from;
Uint2 type_to;
ValNodePtr src_options;
ValNodePtr dst_options;
Uint1 leave_original;
ValNodePtr src_feat_constraint;
} ConvertFeatureAction, PNTR ConvertFeatureActionPtr;
NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionFree PROTO ((ConvertFeatureActionPtr ));
NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionNew PROTO (( void ));
NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFeatureActionAsnWrite PROTO (( ConvertFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Feature_location_strand_from_any 0
#define Feature_location_strand_from_plus 1
#define Feature_location_strand_from_minus 2
#define Feature_location_strand_from_unknown 3
#define Feature_location_strand_from_both 4
/* following #defines are for enumerated type, not used by object loaders */
#define Feature_location_strand_to_plus 1
#define Feature_location_strand_to_minus 2
#define Feature_location_strand_to_unknown 3
#define Feature_location_strand_to_both 4
#define Feature_location_strand_to_reverse 5
/**************************************************
*
* EditLocationStrand
*
**************************************************/
typedef struct struct_Edit_location_strand {
Uint2 strand_from;
Uint2 strand_to;
} EditLocationStrand, PNTR EditLocationStrandPtr;
NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandFree PROTO ((EditLocationStrandPtr ));
NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandNew PROTO (( void ));
NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL EditLocationStrandAsnWrite PROTO (( EditLocationStrandPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_5_set_constraint_all 0
#define Partial_5_set_constraint_at_end 1
#define Partial_5_set_constraint_bad_start 2
#define Partial_5_set_constraint_frame_not_one 3
/**************************************************
*
* Partial5SetAction
*
**************************************************/
typedef struct struct_Partial_5_set_action {
Uint2 constraint;
Uint1 extend;
} Partial5SetAction, PNTR Partial5SetActionPtr;
NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionFree PROTO ((Partial5SetActionPtr ));
NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionNew PROTO (( void ));
NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL Partial5SetActionAsnWrite PROTO (( Partial5SetActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_5_clear_constraint_all 0
#define Partial_5_clear_constraint_not_at_end 1
#define Partial_5_clear_constraint_good_start 2
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_3_set_constraint_all 0
#define Partial_3_set_constraint_at_end 1
#define Partial_3_set_constraint_bad_end 2
/**************************************************
*
* Partial3SetAction
*
**************************************************/
typedef struct struct_Partial_3_set_action {
Uint2 constraint;
Uint1 extend;
} Partial3SetAction, PNTR Partial3SetActionPtr;
NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionFree PROTO ((Partial3SetActionPtr ));
NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionNew PROTO (( void ));
NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL Partial3SetActionAsnWrite PROTO (( Partial3SetActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_3_clear_constraint_all 0
#define Partial_3_clear_constraint_not_at_end 1
#define Partial_3_clear_constraint_good_end 2
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_both_set_constraint_all 0
#define Partial_both_set_constraint_at_end 1
/**************************************************
*
* PartialBothSetAction
*
**************************************************/
typedef struct struct_Partial_both_set_action {
Uint2 constraint;
Uint1 extend;
} PartialBothSetAction, PNTR PartialBothSetActionPtr;
NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionFree PROTO ((PartialBothSetActionPtr ));
NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionNew PROTO (( void ));
NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PartialBothSetActionAsnWrite PROTO (( PartialBothSetActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_both_clear_constraint_all 0
#define Partial_both_clear_constraint_not_at_end 1
/* following #defines are for enumerated type, not used by object loaders */
#define Convert_location_type_join 1
#define Convert_location_type_order 2
#define Convert_location_type_merge 3
/**************************************************
*
* ExtendToFeature
*
**************************************************/
typedef struct struct_Extend_to_feature {
Uint2 type;
Uint1 include_feat;
ValNodePtr distance;
} ExtendToFeature, PNTR ExtendToFeaturePtr;
NLM_EXTERN ExtendToFeaturePtr LIBCALL ExtendToFeatureFree PROTO ((ExtendToFeaturePtr ));
NLM_EXTERN ExtendToFeaturePtr LIBCALL ExtendToFeatureNew PROTO (( void ));
NLM_EXTERN ExtendToFeaturePtr LIBCALL ExtendToFeatureAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ExtendToFeatureAsnWrite PROTO (( ExtendToFeaturePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr LocationEditTypePtr;
typedef ValNode LocationEditType;
#define LocationEditType_strand 1
#define LocationEditType_set_5_partial 2
#define LocationEditType_clear_5_partial 3
#define LocationEditType_set_3_partial 4
#define LocationEditType_clear_3_partial 5
#define LocationEditType_set_both_partial 6
#define LocationEditType_clear_both_partial 7
#define LocationEditType_convert 8
#define LocationEditType_extend_5 9
#define LocationEditType_extend_3 10
#define LocationEditType_extend_5_to_feat 11
#define LocationEditType_extend_3_to_feat 12
NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeFree PROTO ((LocationEditTypePtr ));
NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationEditTypeAsnWrite PROTO (( LocationEditTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* EditFeatureLocationAction
*
**************************************************/
typedef struct struct_Edit_feature_location_action {
Uint2 type;
ValNodePtr action;
Uint1 retranslate_cds;
Uint1 also_edit_gene;
ValNodePtr constraint;
} EditFeatureLocationAction, PNTR EditFeatureLocationActionPtr;
NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionFree PROTO ((EditFeatureLocationActionPtr ));
NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionNew PROTO (( void ));
NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL EditFeatureLocationActionAsnWrite PROTO (( EditFeatureLocationActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoBlock
*
**************************************************/
typedef struct struct_Molinfo_block {
ValNodePtr to_list;
ValNodePtr from_list;
ValNodePtr constraint;
} MolinfoBlock, PNTR MolinfoBlockPtr;
NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockFree PROTO ((MolinfoBlockPtr ));
NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockNew PROTO (( void ));
NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoBlockAsnWrite PROTO (( MolinfoBlockPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Descriptor_type_all 0
#define Descriptor_type_title 1
#define Descriptor_type_source 2
#define Descriptor_type_publication 3
#define Descriptor_type_comment 4
#define Descriptor_type_genbank 5
#define Descriptor_type_user 6
#define Descriptor_type_create_date 7
#define Descriptor_type_update_date 8
#define Descriptor_type_mol_info 9
#define Descriptor_type_structured_comment 10
#define Descriptor_type_genome_project_id 11
/**************************************************
*
* RemoveDescriptorAction
*
**************************************************/
typedef struct struct_Remove_descriptor_action {
Uint2 type;
ValNodePtr constraint;
} RemoveDescriptorAction, PNTR RemoveDescriptorActionPtr;
NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionFree PROTO ((RemoveDescriptorActionPtr ));
NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionNew PROTO (( void ));
NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveDescriptorActionAsnWrite PROTO (( RemoveDescriptorActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Autodef_list_type_feature_list 1
#define Autodef_list_type_complete_sequence 2
#define Autodef_list_type_complete_genome 3
#define Autodef_list_type_sequence 4
/* following #defines are for enumerated type, not used by object loaders */
#define Autodef_misc_feat_parse_rule_use_comment_before_first_semicolon 1
#define Autodef_misc_feat_parse_rule_look_for_noncoding_products 2
/**************************************************
*
* AutodefAction
*
**************************************************/
typedef struct struct_Autodef_action {
ValNodePtr modifiers;
Uint2 clause_list_type;
Uint2 misc_feat_parse_rule;
} AutodefAction, PNTR AutodefActionPtr;
NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionFree PROTO ((AutodefActionPtr ));
NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionNew PROTO (( void ));
NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AutodefActionAsnWrite PROTO (( AutodefActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FixPubCapsAction
*
**************************************************/
typedef struct struct_Fix_pub_caps_action {
Uint1 title;
Uint1 authors;
Uint1 affiliation;
Uint1 affil_country;
Uint1 punct_only;
ValNodePtr constraint;
} FixPubCapsAction, PNTR FixPubCapsActionPtr;
NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionFree PROTO ((FixPubCapsActionPtr ));
NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionNew PROTO (( void ));
NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixPubCapsActionAsnWrite PROTO (( FixPubCapsActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Sort_order_short_to_long 1
#define Sort_order_long_to_short 2
#define Sort_order_alphabetical 3
/**************************************************
*
* SortFieldsAction
*
**************************************************/
typedef struct struct_Sort_fields_action {
ValNodePtr field;
Uint2 order;
ValNodePtr constraint;
} SortFieldsAction, PNTR SortFieldsActionPtr;
NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionFree PROTO ((SortFieldsActionPtr ));
NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionNew PROTO (( void ));
NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SortFieldsActionAsnWrite PROTO (( SortFieldsActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FixAuthorCaps
*
**************************************************/
typedef struct struct_Fix_author_caps {
Uint1 last_name_only;
} FixAuthorCaps, PNTR FixAuthorCapsPtr;
NLM_EXTERN FixAuthorCapsPtr LIBCALL FixAuthorCapsFree PROTO ((FixAuthorCapsPtr ));
NLM_EXTERN FixAuthorCapsPtr LIBCALL FixAuthorCapsNew PROTO (( void ));
NLM_EXTERN FixAuthorCapsPtr LIBCALL FixAuthorCapsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixAuthorCapsAsnWrite PROTO (( FixAuthorCapsPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FixCapsActionPtr;
typedef ValNode FixCapsAction;
#define FixCapsAction_pub 1
#define FixCapsAction_src_country 2
#define FixCapsAction_mouse_strain 3
#define FixCapsAction_src_qual 4
#define FixCapsAction_author 5
NLM_EXTERN FixCapsActionPtr LIBCALL FixCapsActionFree PROTO ((FixCapsActionPtr ));
NLM_EXTERN FixCapsActionPtr LIBCALL FixCapsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixCapsActionAsnWrite PROTO (( FixCapsActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FixFormatActionPtr;
typedef ValNode FixFormatAction;
#define FixFormatAction_collection_date 1
#define FixFormatAction_lat_lon 2
#define FixFormatAction_primers 3
#define FixFormatAction_protein_name 4
NLM_EXTERN FixFormatActionPtr LIBCALL FixFormatActionFree PROTO ((FixFormatActionPtr ));
NLM_EXTERN FixFormatActionPtr LIBCALL FixFormatActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixFormatActionAsnWrite PROTO (( FixFormatActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveDuplicateFeatureAction
*
**************************************************/
typedef struct struct_Remove_duplicate_feature_action {
Uint2 type;
Uint1 ignore_partials;
Uint1 case_sensitive;
Uint1 remove_proteins;
ValNodePtr rd_constraint;
} RemoveDuplicateFeatureAction, PNTR RemoveDuplicateFeatureActionPtr;
NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionFree PROTO ((RemoveDuplicateFeatureActionPtr ));
NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionNew PROTO (( void ));
NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveDuplicateFeatureActionAsnWrite PROTO (( RemoveDuplicateFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Gene_xref_suppression_type_any 0
#define Gene_xref_suppression_type_suppressing 1
#define Gene_xref_suppression_type_non_suppressing 2
/* following #defines are for enumerated type, not used by object loaders */
#define Gene_xref_necessary_type_any 0
#define Gene_xref_necessary_type_necessary 1
#define Gene_xref_necessary_type_unnecessary 2
/**************************************************
*
* GeneXrefType
*
**************************************************/
typedef struct struct_Gene_xref_type {
Uint2 feature;
Uint2 suppression;
Uint2 necessary;
} GeneXrefType, PNTR GeneXrefTypePtr;
NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeFree PROTO ((GeneXrefTypePtr ));
NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeNew PROTO (( void ));
NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL GeneXrefTypeAsnWrite PROTO (( GeneXrefTypePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr XrefTypePtr;
typedef ValNode XrefType;
#define XrefType_gene 1
NLM_EXTERN XrefTypePtr LIBCALL XrefTypeFree PROTO ((XrefTypePtr ));
NLM_EXTERN XrefTypePtr LIBCALL XrefTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL XrefTypeAsnWrite PROTO (( XrefTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveXrefsAction
*
**************************************************/
typedef struct struct_Remove_xrefs_action {
ValNodePtr xref_type;
ValNodePtr constraint;
} RemoveXrefsAction, PNTR RemoveXrefsActionPtr;
NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionFree PROTO ((RemoveXrefsActionPtr ));
NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionNew PROTO (( void ));
NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveXrefsActionAsnWrite PROTO (( RemoveXrefsActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MakeGeneXrefAction
*
**************************************************/
typedef struct struct_Make_gene_xref_action {
Uint2 feature;
ValNodePtr constraint;
} MakeGeneXrefAction, PNTR MakeGeneXrefActionPtr;
NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionFree PROTO ((MakeGeneXrefActionPtr ));
NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionNew PROTO (( void ));
NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MakeGeneXrefActionAsnWrite PROTO (( MakeGeneXrefActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Author_fix_type_truncate_middle_initials 1
#define Author_fix_type_strip_suffix 2
#define Author_fix_type_move_middle_to_first 3
/**************************************************
*
* AuthorFixAction
*
**************************************************/
typedef struct struct_Author_fix_action {
Uint2 fix_type;
ValNodePtr constraint;
} AuthorFixAction, PNTR AuthorFixActionPtr;
NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionFree PROTO ((AuthorFixActionPtr ));
NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionNew PROTO (( void ));
NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AuthorFixActionAsnWrite PROTO (( AuthorFixActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* UpdateSequencesAction
*
**************************************************/
typedef struct struct_Update_sequences_action {
CharPtr filename;
Uint1 add_cit_subs;
} UpdateSequencesAction, PNTR UpdateSequencesActionPtr;
NLM_EXTERN UpdateSequencesActionPtr LIBCALL UpdateSequencesActionFree PROTO ((UpdateSequencesActionPtr ));
NLM_EXTERN UpdateSequencesActionPtr LIBCALL UpdateSequencesActionNew PROTO (( void ));
NLM_EXTERN UpdateSequencesActionPtr LIBCALL UpdateSequencesActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL UpdateSequencesActionAsnWrite PROTO (( UpdateSequencesActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr CreateTSAIdsSrcPtr;
typedef ValNode CreateTSAIdsSrc;
#define CreateTSAIdsSrc_local_id 1
#define CreateTSAIdsSrc_defline 2
NLM_EXTERN CreateTSAIdsSrcPtr LIBCALL CreateTSAIdsSrcFree PROTO ((CreateTSAIdsSrcPtr ));
NLM_EXTERN CreateTSAIdsSrcPtr LIBCALL CreateTSAIdsSrcAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CreateTSAIdsSrcAsnWrite PROTO (( CreateTSAIdsSrcPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* CreateTSAIdsAction
*
**************************************************/
typedef struct struct_Create_TSA_ids_action {
ValNodePtr src;
CharPtr suffix;
struct struct_Text_portion PNTR id_text_portion;
} CreateTSAIdsAction, PNTR CreateTSAIdsActionPtr;
NLM_EXTERN CreateTSAIdsActionPtr LIBCALL CreateTSAIdsActionFree PROTO ((CreateTSAIdsActionPtr ));
NLM_EXTERN CreateTSAIdsActionPtr LIBCALL CreateTSAIdsActionNew PROTO (( void ));
NLM_EXTERN CreateTSAIdsActionPtr LIBCALL CreateTSAIdsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CreateTSAIdsActionAsnWrite PROTO (( CreateTSAIdsActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* AutofixAction
*
**************************************************/
typedef struct struct_Autofix_action {
CharPtr test_name;
} AutofixAction, PNTR AutofixActionPtr;
NLM_EXTERN AutofixActionPtr LIBCALL AutofixActionFree PROTO ((AutofixActionPtr ));
NLM_EXTERN AutofixActionPtr LIBCALL AutofixActionNew PROTO (( void ));
NLM_EXTERN AutofixActionPtr LIBCALL AutofixActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AutofixActionAsnWrite PROTO (( AutofixActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FixSetsActionPtr;
typedef ValNode FixSetsAction;
#define FixSetsAction_remove_single_item_set 1
#define FixSetsAction_renormalize_nuc_prot_sets 2
#define FixSetsAction_fix_pop_to_phy 3
NLM_EXTERN FixSetsActionPtr LIBCALL FixSetsActionFree PROTO ((FixSetsActionPtr ));
NLM_EXTERN FixSetsActionPtr LIBCALL FixSetsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixSetsActionAsnWrite PROTO (( FixSetsActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr TableMatchTypePtr;
typedef ValNode TableMatchType;
#define TableMatchType_feature_id 1
#define TableMatchType_gene_locus_tag 2
#define TableMatchType_protein_id 3
#define TableMatchType_dbxref 4
#define TableMatchType_nuc_id 5
#define TableMatchType_src_qual 6
#define TableMatchType_protein_name 7
#define TableMatchType_any 8
NLM_EXTERN TableMatchTypePtr LIBCALL TableMatchTypeFree PROTO ((TableMatchTypePtr ));
NLM_EXTERN TableMatchTypePtr LIBCALL TableMatchTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TableMatchTypeAsnWrite PROTO (( TableMatchTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* TableMatch
*
**************************************************/
typedef struct struct_Table_match {
ValNodePtr match_type;
Uint2 match_location;
} TableMatch, PNTR TableMatchPtr;
NLM_EXTERN TableMatchPtr LIBCALL TableMatchFree PROTO ((TableMatchPtr ));
NLM_EXTERN TableMatchPtr LIBCALL TableMatchNew PROTO (( void ));
NLM_EXTERN TableMatchPtr LIBCALL TableMatchAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TableMatchAsnWrite PROTO (( TableMatchPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ApplyTableExtraDataPtr;
typedef ValNode ApplyTableExtraData;
#define ApplyTableExtraData_table 1
NLM_EXTERN ApplyTableExtraDataPtr LIBCALL ApplyTableExtraDataFree PROTO ((ApplyTableExtraDataPtr ));
NLM_EXTERN ApplyTableExtraDataPtr LIBCALL ApplyTableExtraDataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ApplyTableExtraDataAsnWrite PROTO (( ApplyTableExtraDataPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ApplyTableAction
*
**************************************************/
typedef struct struct_Apply_table_action {
CharPtr filename;
struct struct_Table_match PNTR match_type;
ValNodePtr in_memory_table;
} ApplyTableAction, PNTR ApplyTableActionPtr;
NLM_EXTERN ApplyTableActionPtr LIBCALL ApplyTableActionFree PROTO ((ApplyTableActionPtr ));
NLM_EXTERN ApplyTableActionPtr LIBCALL ApplyTableActionNew PROTO (( void ));
NLM_EXTERN ApplyTableActionPtr LIBCALL ApplyTableActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ApplyTableActionAsnWrite PROTO (( ApplyTableActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* AddFileAction
*
**************************************************/
typedef struct struct_Add_file_action {
CharPtr filename;
ValNodePtr in_memory_table;
} AddFileAction, PNTR AddFileActionPtr;
NLM_EXTERN AddFileActionPtr LIBCALL AddFileActionFree PROTO ((AddFileActionPtr ));
NLM_EXTERN AddFileActionPtr LIBCALL AddFileActionNew PROTO (( void ));
NLM_EXTERN AddFileActionPtr LIBCALL AddFileActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AddFileActionAsnWrite PROTO (( AddFileActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* AddDescriptorListAction
*
**************************************************/
typedef struct struct_Add_descriptor_list_action {
struct struct_Add_file_action PNTR descriptor_list;
ValNodePtr constraint;
} AddDescriptorListAction, PNTR AddDescriptorListActionPtr;
NLM_EXTERN AddDescriptorListActionPtr LIBCALL AddDescriptorListActionFree PROTO ((AddDescriptorListActionPtr ));
NLM_EXTERN AddDescriptorListActionPtr LIBCALL AddDescriptorListActionNew PROTO (( void ));
NLM_EXTERN AddDescriptorListActionPtr LIBCALL AddDescriptorListActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AddDescriptorListActionAsnWrite PROTO (( AddDescriptorListActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveSequencesAction
*
**************************************************/
typedef struct struct_Remove_sequences_action {
ValNodePtr constraint;
} RemoveSequencesAction, PNTR RemoveSequencesActionPtr;
NLM_EXTERN RemoveSequencesActionPtr LIBCALL RemoveSequencesActionFree PROTO ((RemoveSequencesActionPtr ));
NLM_EXTERN RemoveSequencesActionPtr LIBCALL RemoveSequencesActionNew PROTO (( void ));
NLM_EXTERN RemoveSequencesActionPtr LIBCALL RemoveSequencesActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveSequencesActionAsnWrite PROTO (( RemoveSequencesActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr MacroActionChoicePtr;
typedef ValNode MacroActionChoice;
#define MacroActionChoice_aecr 1
#define MacroActionChoice_parse 2
#define MacroActionChoice_add_feature 3
#define MacroActionChoice_remove_feature 4
#define MacroActionChoice_convert_feature 5
#define MacroActionChoice_edit_location 6
#define MacroActionChoice_remove_descriptor 7
#define MacroActionChoice_autodef 8
#define MacroActionChoice_removesets 9
#define MacroActionChoice_trim_junk_from_primer_seq 10
#define MacroActionChoice_trim_stop_from_complete_cds 11
#define MacroActionChoice_fix_usa_and_states 12
#define MacroActionChoice_synchronize_cds_partials 13
#define MacroActionChoice_adjust_for_consensus_splice 14
#define MacroActionChoice_fix_pub_caps 15
#define MacroActionChoice_remove_seg_gaps 16
#define MacroActionChoice_sort_fields 17
#define MacroActionChoice_apply_molinfo_block 18
#define MacroActionChoice_fix_caps 19
#define MacroActionChoice_fix_format 20
#define MacroActionChoice_fix_spell 21
#define MacroActionChoice_remove_duplicate_features 22
#define MacroActionChoice_remove_lineage_notes 23
#define MacroActionChoice_remove_xrefs 24
#define MacroActionChoice_make_gene_xrefs 25
#define MacroActionChoice_make_bold_xrefs 26
#define MacroActionChoice_fix_author 27
#define MacroActionChoice_update_sequences 28
#define MacroActionChoice_add_trans_splicing 29
#define MacroActionChoice_remove_invalid_ecnumbers 30
#define MacroActionChoice_create_tsa_ids 31
#define MacroActionChoice_perform_autofix 32
#define MacroActionChoice_fix_sets 33
#define MacroActionChoice_apply_table 34
#define MacroActionChoice_remove_sequences 35
#define MacroActionChoice_propagate_sequence_technology 36
#define MacroActionChoice_add_file_descriptors 37
#define MacroActionChoice_propagate_missing_old_name 38
#define MacroActionChoice_autoapply_structured_comments 39
NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceFree PROTO ((MacroActionChoicePtr ));
NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MacroActionChoiceAsnWrite PROTO (( MacroActionChoicePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr SearchFuncPtr;
typedef ValNode SearchFunc;
#define SearchFunc_string_constraint 1
#define SearchFunc_contains_plural 2
#define SearchFunc_n_or_more_brackets_or_parentheses 3
#define SearchFunc_three_numbers 4
#define SearchFunc_underscore 5
#define SearchFunc_prefix_and_numbers 6
#define SearchFunc_all_caps 7
#define SearchFunc_unbalanced_paren 8
#define SearchFunc_too_long 9
#define SearchFunc_has_term 10
NLM_EXTERN SearchFuncPtr LIBCALL SearchFuncFree PROTO ((SearchFuncPtr ));
NLM_EXTERN SearchFuncPtr LIBCALL SearchFuncAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SearchFuncAsnWrite PROTO (( SearchFuncPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SimpleReplace
*
**************************************************/
typedef struct struct_Simple_replace {
CharPtr replace;
Uint1 whole_string;
Uint1 weasel_to_putative;
} SimpleReplace, PNTR SimpleReplacePtr;
NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceFree PROTO ((SimpleReplacePtr ));
NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceNew PROTO (( void ));
NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SimpleReplaceAsnWrite PROTO (( SimpleReplacePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ReplaceFuncPtr;
typedef ValNode ReplaceFunc;
#define ReplaceFunc_simple_replace 1
#define ReplaceFunc_haem_replace 2
NLM_EXTERN ReplaceFuncPtr LIBCALL ReplaceFuncFree PROTO ((ReplaceFuncPtr ));
NLM_EXTERN ReplaceFuncPtr LIBCALL ReplaceFuncAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ReplaceFuncAsnWrite PROTO (( ReplaceFuncPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ReplaceRule
*
**************************************************/
typedef struct struct_Replace_rule {
ValNodePtr replace_func;
Uint1 move_to_note;
} ReplaceRule, PNTR ReplaceRulePtr;
NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleFree PROTO ((ReplaceRulePtr ));
NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleNew PROTO (( void ));
NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ReplaceRuleAsnWrite PROTO (( ReplaceRulePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Fix_type_none 0
#define Fix_type_typo 1
#define Fix_type_putative_typo 2
#define Fix_type_quickfix 3
#define Fix_type_no_organelle_for_prokaryote 4
#define Fix_type_might_be_nonfunctional 5
#define Fix_type_database 6
#define Fix_type_remove_organism_name 7
#define Fix_type_inappropriate_symbol 8
#define Fix_type_evolutionary_relationship 9
#define Fix_type_use_protein 10
#define Fix_type_hypothetical 11
#define Fix_type_british 12
#define Fix_type_description 13
#define Fix_type_gene 14
/**************************************************
*
* SuspectRule
*
**************************************************/
typedef struct struct_Suspect_rule {
struct struct_Suspect_rule PNTR next;
ValNodePtr find;
ValNodePtr except;
ValNodePtr feat_constraint;
Uint2 rule_type;
struct struct_Replace_rule PNTR replace;
CharPtr description;
} SuspectRule, PNTR SuspectRulePtr;
NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleFree PROTO ((SuspectRulePtr ));
NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleNew PROTO (( void ));
NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SuspectRuleAsnWrite PROTO (( SuspectRulePtr , AsnIoPtr, AsnTypePtr));
#ifdef __cplusplus
/* { */ }
#endif
#endif /* _objmacro_ */
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
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