/usr/include/OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h is in libopenms-dev 1.11.1-3.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// --------------------------------------------------------------------------
// $Maintainer: Sandro Andreotti $
// $Authors: Sandro Andreotti, Andreas Bertsch$
// --------------------------------------------------------------------------
#ifndef OPENMS_ANALYSIS_DENOVO_DENOVOIDENTIFICATION_H
#define OPENMS_ANALYSIS_DENOVO_DENOVOIDENTIFICATION_H
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <vector>
namespace OpenMS
{
/**
@brief Base class for de novo identification
@ingroup Analysis_DeNovo
*/
class OPENMS_DLLAPI DeNovoIdentification :
public DefaultParamHandler
{
public:
/** @name Constructors and destructors
*/
//@{
/// default constructor
DeNovoIdentification();
/// destructor
virtual ~DeNovoIdentification();
/// copy constructor
DeNovoIdentification(const DeNovoIdentification & rhs);
//@}
/// assignment operator
DeNovoIdentification & operator=(const DeNovoIdentification & rhs);
/// performs an ProteinIdentification run on a RichPeakMap
virtual void getIdentifications(std::vector<PeptideIdentification> & ids, const RichPeakMap & exp) = 0;
/// performs an ProteinIdentification run on a PeakSpectrum
virtual void getIdentification(PeptideIdentification & id, const RichPeakSpectrum & spectrum) = 0;
};
} // namespace OpenMS
#endif // OPENMS_ANALYSIS_DENOVO_DENOVOIDENTIFICATION_H
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