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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// --------------------------------------------------------------------------
// $Maintainer: Stephan Aiche $
// $Authors: Stephan Aiche $
// --------------------------------------------------------------------------
#ifndef OPENMS_ANALYSIS_QUANTITATION_TMTSIXPLEXQUANTITATIONMETHOD_H
#define OPENMS_ANALYSIS_QUANTITATION_TMTSIXPLEXQUANTITATIONMETHOD_H
#include <OpenMS/config.h>
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>
namespace OpenMS
{
/**
@brief TMT 6plex quantitation to be used with the IsobaricQuantitation.
@htmlinclude OpenMS_TMTSixPlexQuantitationMethod.parameters
*/
class OPENMS_DLLAPI TMTSixPlexQuantitationMethod :
public IsobaricQuantitationMethod
{
public:
/// Default c'tor
TMTSixPlexQuantitationMethod();
/// d'tor
~TMTSixPlexQuantitationMethod();
/// Copy c'tor
TMTSixPlexQuantitationMethod(const TMTSixPlexQuantitationMethod& other);
/// Assignment operator
TMTSixPlexQuantitationMethod & operator=(const TMTSixPlexQuantitationMethod& rhs);
/// @brief Methods to implement from IsobaricQuantitationMethod
/// @{
const String& getName() const;
const IsobaricChannelList& getChannelInformation() const;
Size getNumberOfChannels() const;
virtual Matrix<double> getIsotopeCorrectionMatrix() const;
Size getReferenceChannel() const;
/// @}
private:
/// the actuacl information on the different itraq4plex channels.
IsobaricChannelList channels_;
/// The name of the quantitation method.
static const String name_;
/// The reference channel for this experiment.
Size reference_channel_;
protected:
/// implemented for DefaultParamHandler
void setDefaultParams_();
/// implemented for DefaultParamHandler
void updateMembers_();
};
} // namespace
#endif // OPENMS_ANALYSIS_QUANTITATION_TMTSIXPLEXQUANTITATIONMETHOD_H
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