/usr/include/OpenMS/FORMAT/CsvFile.h is in libopenms-dev 1.11.1-3.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: David Wojnar $
// $Authors: David Wojnar $
// --------------------------------------------------------------------------
#ifndef OPENMS_FORMAT_CSVFILE_H
#define OPENMS_FORMAT_CSVFILE_H
#include <OpenMS/FORMAT/TextFile.h>
namespace OpenMS
{
class StringList;
/**
@brief This class handles csv files. Currently only loading is implemented.
@note items are allowed to be enclosed by only one character e.g. "item" where " is enclosing character
@ingroup FileIO
*/
class OPENMS_DLLAPI CsvFile :
public TextFile
{
public:
///Default constructor
CsvFile();
/// destructor
virtual ~CsvFile();
/**
@brief Constructor with filename
@param filename The input file name.
@param is character which separates the items.
@param ie Whether or not every item is enclosed.
@param first_n Only the given number of lines are read, starting from the beginning of the file.
@exception Exception::FileNotFound is thrown if the file could not be opened.
*/
CsvFile(const String & filename, char is = ',', bool ie = false, Int first_n = -1);
/**
@brief Loads data from a text file.
@param filename The input file name.
@param is character which separates the items.
@param ie Whether or not every item is enclosed.
@param first_n Only the given number of lines are read, starting from the beginning of the file.
@exception Exception::FileNotFound is thrown if the file could not be opened.
*/
void fload(const String & filename, char is = ',', bool ie = false, Int first_n = -1);
/**
@brief writes all items from a row to list
@param row the row which will be read
@param list StringList which will contain all items of the row
@exception Exception::InvalidIterator is thrown if the row is not existing
@return returns false if the given row could not be separated into items
*/
bool getRow(Size row, StringList & list);
private:
char itemseperator_;
bool itemenclosed_;
};
} // namespace OpenMS
#endif // OPENMS_FORMAT_CSVFILE_H
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