This file is indexed.

/usr/include/OpenMS/FORMAT/DB/PersistentObject.h is in libopenms-dev 1.11.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------

#ifndef OPENMS_FORMAT_DB_PERSISTENTOBJECT_H
#define OPENMS_FORMAT_DB_PERSISTENTOBJECT_H

#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>

#include <iostream>

namespace OpenMS
{
  /**
    @brief Base class for all persistent objects.

    Interface for all classes that can be stored persistently in the OpenMS DB.

    @ingroup DatabaseIO
  */
  class OPENMS_DLLAPI PersistentObject
  {

public:
    /// Default constructor
    PersistentObject();

    /// Destructor
    virtual ~PersistentObject();

    /// Assignment operator
    PersistentObject & operator=(const PersistentObject & rhs);

    /**
      @brief Returns the persistence id

      This id is only used in the DBAdapter the id is used to connect the object to the data stored in the DB.
    */
    const UID & getPersistenceId() const;

    /**
      @brief Sets the persistence id

      This id is only used in the DBAdapter the id is used to connect the object to the data stored in the DB.
      <BR>
      Do not set the persistence id unless you know what you are doing!
    */
    void setPersistenceId(const UID & persistence_id);

    /**
      @brief Clears the persistence id

      Sets the id to 0.<br>
      @param deep determines which ids are cleared. <tt>false</tt> means that only the id of the current object is reset.
      <tt>true</tt> means that the ids of all sub-objects are reset as well (default).
    */
    void clearId(bool deep = true);

protected:

    ///A persistence id used to refer the data back to the source
    UID persistence_id_;

    /**
      @brief Clears the persistence id of all sub-objects.


    */
    virtual void clearChildIds_() = 0;
  };

}
#endif