/usr/include/OpenMS/FORMAT/UnimodXMLFile.h is in libopenms-dev 1.11.1-3.
This file is owned by root:root, with mode 0o644.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#ifndef OPENMS_FORMAT_UNIMODXMLFILE_H
#define OPENMS_FORMAT_UNIMODXMLFILE_H
#include <OpenMS/FORMAT/XMLFile.h>
namespace OpenMS
{
class ResidueModification;
/**
@brief Used to load XML files from unimod.org files
@ingroup FileIO
*/
class OPENMS_DLLAPI UnimodXMLFile :
public Internal::XMLFile
{
public:
/// Default constructor
UnimodXMLFile();
/// Destructor
virtual ~UnimodXMLFile();
/**
@brief loads data from unimod.xml file
@param filename the filename were the unimod xml file should be read from
@param modifications the modifications which are read from the file
@throw FileNotFound is thrown if the file could not be found
@throw ParseError is thrown if the given file could not be parsed
@ingroup FileIO
*/
void load(const String & filename, std::vector<ResidueModification *> & modifications);
private:
///Not implemented
UnimodXMLFile(const UnimodXMLFile & rhs);
///Not implemented
UnimodXMLFile & operator=(const UnimodXMLFile & rhs);
};
} // namespace OpenMS
#endif // OPENMS_FORMAT_UNIMODXMLFILE_H
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