/usr/include/OpenMS/METADATA/IonSource.h is in libopenms-dev 1.11.1-3.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
#ifndef OPENMS_METADATA_IONSOURCE_H
#define OPENMS_METADATA_IONSOURCE_H
#include <OpenMS/METADATA/MetaInfoInterface.h>
namespace OpenMS
{
/**
@brief Description of a ion source (part of a MS Instrument)
@ingroup Metadata
*/
class OPENMS_DLLAPI IonSource :
public MetaInfoInterface
{
public:
/// inlet type
enum InletType
{
INLETNULL, ///< Unknown
DIRECT, ///< Direct
BATCH, ///< Batch (e.g. in MALDI)
CHROMATOGRAPHY, ///< Chromatography (liquid)
PARTICLEBEAM, ///< Particle beam
MEMBRANESEPARATOR, ///< Membrane separator
OPENSPLIT, ///< Open split
JETSEPARATOR, ///< Jet separator
SEPTUM, ///< Septum
RESERVOIR, ///< Reservoir
MOVINGBELT, ///< Moving belt
MOVINGWIRE, ///< Moving wire
FLOWINJECTIONANALYSIS, ///< Flow injection analysis
ELECTROSPRAYINLET, ///< Electro spray
THERMOSPRAYINLET, ///< Thermo spray
INFUSION, ///< Infusion
CONTINUOUSFLOWFASTATOMBOMBARDMENT, ///< Continuous flow fast atom bombardment
INDUCTIVELYCOUPLEDPLASMA, ///< Inductively coupled plasma
MEMBRANE, ///< Membrane inlet
NANOSPRAY, ///< Nanospray inlet
SIZE_OF_INLETTYPE
};
/// Names of inlet types
static const std::string NamesOfInletType[SIZE_OF_INLETTYPE];
/// ionization method
enum IonizationMethod
{
IONMETHODNULL, ///< Unknown
ESI, ///< electrospray ionisation
EI, ///< electron ionization
CI, ///< chemical ionisation
FAB, ///< fast atom bombardment
TSP, ///< thermospray
LD, ///< laser desorption
FD, ///< field desorption
FI, ///< flame ionization
PD, ///< plasma desorption
SI, ///< secondary ion MS
TI, ///< thermal ionization
API, ///< atmospheric pressure ionisation
ISI, ///<
CID, ///< collision induced decomposition
CAD, ///< collision activated decomposition
HN, ///<
APCI, ///< atmospheric pressure chemical ionization
APPI, ///< atmospheric pressure photo ionization
ICP, ///< inductively coupled plasma
NESI, ///< Nano electrospray ionization
MESI, ///< Micro electrospray ionization
SELDI, ///< Surface enhanced laser desorption ionization
SEND, ///< Surface enhanced neat desorption
FIB, ///< Fast ion bombardment
MALDI, ///< Matrix-assisted laser desorption ionization
MPI, ///< Multiphoton ionization
DI, ///< desorption ionization
FA, ///< flowing afterglow
FII, ///< field ionization
GD_MS, ///< glow discharge ionization
NICI, ///< negative ion chemical ionization
NRMS, ///< neutralization reionization mass spectrometry
PI, ///< photoionization
PYMS, ///< pyrolysis mass spectrometry
REMPI, ///< resonance enhanced multiphoton ionization
AI, ///< adiabatic ionization
ASI, ///< associative ionization
AD, ///< autodetachment
AUI, ///< autoionization
CEI, ///< charge exchange ionization
CHEMI, ///< chemi-ionization
DISSI, ///< dissociative ionization
LSI, ///< liquid secondary ionization
PEI, ///< penning ionization
SOI, ///< soft ionization
SPI, ///< spark ionization
SUI, ///< surface ionization
VI, ///< vertical ionization
AP_MALDI, ///< atmospheric pressure matrix-assisted laser desorption ionization
SILI, ///< desorption/ionization on silicon
SALDI, ///< surface-assisted laser desorption ionization
SIZE_OF_IONIZATIONMETHOD
};
/// Names of ionization methods
static const std::string NamesOfIonizationMethod[SIZE_OF_IONIZATIONMETHOD];
/// Polarity of the ion source
enum Polarity
{
POLNULL, ///< Unknown
POSITIVE, ///< Positive polarity
NEGATIVE, ///< Negative polarity
SIZE_OF_POLARITY
};
/// Names of polarity of the ion source
static const std::string NamesOfPolarity[SIZE_OF_POLARITY];
/// Constructor
IonSource();
/// Copy constructor
IonSource(const IonSource & source);
/// Destructor
~IonSource();
/// Assignment operator
IonSource & operator=(const IonSource & source);
/// Equality operator
bool operator==(const IonSource & rhs) const;
/// Equality operator
bool operator!=(const IonSource & rhs) const;
/// returns the inlet type
InletType getInletType() const;
/// sets the inlet type
void setInletType(InletType inlet_type);
/// returns the ionization method
IonizationMethod getIonizationMethod() const;
/// sets the ionization method
void setIonizationMethod(IonizationMethod ionization_type);
/// returns the ionization mode
Polarity getPolarity() const;
/// sets the ionization mode
void setPolarity(Polarity polarity);
/**
@brief returns the position of this part in the whole Instrument.
Order can be ignored, as long the instrument has this default setup:
- one ion source
- one or many mass analyzers
- one ion detector
For more complex instruments, the order should be defined.
*/
Int getOrder() const;
/// sets the order
void setOrder(Int order);
protected:
InletType inlet_type_;
IonizationMethod ionization_method_;
Polarity polarity_;
Int order_;
};
} // namespace OpenMS
#endif // OPENMS_METADATA_IONSOURCE_H
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