/usr/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletCudaKernel.h is in libopenms-dev 1.11.1-3.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Rene Hussong$
// --------------------------------------------------------------------------
//**************************
//Uses the sorting code provided by Alan Kaatz
//**************************
#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_ISOTOPEWAVELETCUDAKERNEL_H
#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_ISOTOPEWAVELETCUDAKERNEL_H
#include <string>
#include <cuda.h>
#include <cuda_runtime.h>
using namespace std;
namespace OpenMS
{
int checkCUDAError(const char * msg);
void getExternalCudaTransforms(dim3 dimGrid, dim3 dimBlock, float * positions_dev, float * intensities_dev, int from_max_to_left, int from_max_to_right, float * result_dev,
const int charge, const int to_load, const int to_compute, const int size, float * fwd2, bool highres = false);
int sortOnDevice(float * array, int * pos_indices, int numElements, int padding);
void scoreOnDevice(int * sorted_positions_indices, float * trans_intensities, float * pos, float * scores,
const int c, const int num_of_scores, const int overall_size, const unsigned int max_peak_cutoff, const float ampl_cutoff);
void deriveOnDevice(float * spec, float * spec_pos, float * fwd, const int size, float * intensities_dev, bool highres = false);
}
#endif
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