This file is indexed.

/usr/include/idas/idas_bbdpre.h is in libsundials-serial-dev 2.5.0-3ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
/*
 * -----------------------------------------------------------------
 * $Revision: 1.9 $
 * $Date: 2010/12/01 22:15:15 $
 * ----------------------------------------------------------------- 
 * Programmer(s): Alan C. Hindmarsh, Radu Serban and
 *                Aaron Collier @ LLNL
 * -----------------------------------------------------------------
 * Copyright (c) 2002, The Regents of the University of California.
 * Produced at the Lawrence Livermore National Laboratory.
 * All rights reserved.
 * For details, see the LICENSE file.
 * -----------------------------------------------------------------
 * This is the header file for the IDABBDPRE module, for a
 * band-block-diagonal preconditioner, i.e. a block-diagonal
 * matrix with banded blocks, for use with IDAS and
 * IDASpgmr/IDASpbcg/IDASptfqmr.
 */

#ifndef _IDASBBDPRE_H
#define _IDASBBDPRE_H

#ifdef __cplusplus     /* wrapper to enable C++ usage */
extern "C" {
#endif

#include <sundials/sundials_nvector.h>

/* 
 * =================================================================
 * PART I - forward problems
 * =================================================================
 */

/*
 * -----------------------------------------------------------------
 *
 * SUMMARY
 *
 * These routines provide a preconditioner matrix that is
 * block-diagonal with banded blocks. The blocking corresponds
 * to the distribution of the dependent variable vector y among
 * the processors. Each preconditioner block is generated from
 * the Jacobian of the local part (on the current processor) of a
 * given function G(t,y,y') approximating F(t,y,y'). The blocks
 * are generated by a difference quotient scheme on each processor
 * independently. This scheme utilizes an assumed banded structure
 * with given half-bandwidths, mudq and mldq. However, the banded
 * Jacobian block kept by the scheme has half-bandwiths mukeep and
 * mlkeep, which may be smaller.
 *
 * The user's calling program should have the following form:
 *
 *   #include <idas/idas_bbdpre.h>
 *   #include <nvector_parallel.h>
 *   ...
 *   y0  = N_VNew_Parallel(...);
 *   yp0 = N_VNew_Parallel(...);
 *   ...
 *   ida_mem = IDACreate(...);
 *   ier = IDAInit(...);
 *   ...
 *   flag = IDASptfqmr(ida_mem, maxl);
 *       -or-
 *   flag = IDASpgmr(ida_mem, maxl);
 *       -or-
 *   flag = IDASpbcg(ida_mem, maxl);
 *   ...
 *   flag = IDABBDPrecInit(ida_mem, Nlocal, mudq, mldq,
 *                         mukeep, mlkeep, dq_rel_yy, Gres, Gcomm);
 *   ...
 *   ier = IDASolve(...);
 *   ...
 *   IDAFree(&ida_mem);
 *
 *   N_VDestroy(y0);
 *   N_VDestroy(yp0);
 *
 * The user-supplied routines required are:
 *
 *   res  is the function F(t,y,y') defining the DAE system to
 *   be solved:  F(t,y,y') = 0.
 *
 *   Gres  is the function defining a local approximation
 *   G(t,y,y') to F, for the purposes of the preconditioner.
 *
 *   Gcomm  is the function performing communication needed
 *   for Glocal.
 *
 * Notes:
 *
 * 1) This header file is included by the user for the definition
 *    of the IBBDPrecData type and for needed function prototypes.
 *
 * 2) The IDABBDPrecInit call includes half-bandwidths mudq and
 *    mldq to be used in the approximate Jacobian. They need
 *    not be the true half-bandwidths of the Jacobian of the
 *    local block of G, when smaller values may provide a greater
 *    efficiency. Similarly, mukeep and mlkeep, specifying the
 *    bandwidth kept for the approximate Jacobian, need not be
 *    the true half-bandwidths. Also, mukeep, mlkeep, mudq, and
 *    mldq need not be the same on every processor.
 *
 * 3) The actual name of the user's res function is passed to
 *    IDAInit, and the names of the user's Gres and Gcomm
 *    functions are passed to IDABBDPrecInit.        
 *
 * 4) The pointer to the user-defined data block user_data, which
 *    is set through IDASetUserData is also available to the user
 *    in glocal and gcomm.
 *
 * 5) Optional outputs specific to this module are available by
 *    way of routines listed below. These include work space sizes
 *    and the cumulative number of glocal calls. The costs
 *    associated with this module also include nsetups banded LU
 *    factorizations, nsetups gcomm calls, and nps banded
 *    backsolve calls, where nsetups and nps are integrator
 *    optional outputs.
 * -----------------------------------------------------------------
 */

/*
 * -----------------------------------------------------------------
 * Type : IDABBDLocalFn
 * -----------------------------------------------------------------
 * The user must supply a function G(t,y,y') which approximates
 * the function F for the system F(t,y,y') = 0, and which is
 * computed locally (without interprocess communication).
 * (The case where G is mathematically identical to F is allowed.)
 * The implementation of this function must have type IDABBDLocalFn.
 *
 * This function takes as input the independent variable value tt,
 * the current solution vector yy, the current solution
 * derivative vector yp, and a pointer to the user-defined data
 * block user_data. It is to compute the local part of G(t,y,y')
 * and store it in the vector gval. (Providing memory for yy and
 * gval is handled within this preconditioner module.) It is
 * expected that this routine will save communicated data in work
 * space defined by the user, and made available to the
 * preconditioner function for the problem. The user_data
 * parameter is the same as that passed by the user to the
 * IDAMalloc routine.
 *
 * An IDABBDLocalFn Gres is to return an int, defined in the same
 * way as for the residual function: 0 (success), +1 or -1 (fail).
 * -----------------------------------------------------------------
 */

typedef int (*IDABBDLocalFn)(long int Nlocal, realtype tt,
			     N_Vector yy, N_Vector yp, N_Vector gval,
			     void *user_data);

/*
 * -----------------------------------------------------------------
 * Type : IDABBDCommFn
 * -----------------------------------------------------------------
 * The user may supply a function of type IDABBDCommFn which
 * performs all interprocess communication necessary to
 * evaluate the approximate system function described above.
 *
 * This function takes as input the solution vectors yy and yp,
 * and a pointer to the user-defined data block user_data. The
 * user_data parameter is the same as that passed by the user to
 * the IDASetUserData routine.
 *
 * The IDABBDCommFn Gcomm is expected to save communicated data in
 * space defined with the structure *user_data.
 *
 * A IDABBDCommFn Gcomm returns an int value equal to 0 (success),
 * > 0 (recoverable error), or < 0 (unrecoverable error).
 *
 * Each call to the IDABBDCommFn is preceded by a call to the system
 * function res with the same vectors yy and yp. Thus the
 * IDABBDCommFn gcomm can omit any communications done by res if
 * relevant to the evaluation of the local function glocal.
 * A NULL communication function can be passed to IDABBDPrecInit
 * if all necessary communication was done by res.
 * -----------------------------------------------------------------
 */

typedef int (*IDABBDCommFn)(long int Nlocal, realtype tt,
			    N_Vector yy, N_Vector yp,
			    void *user_data);

/*
 * -----------------------------------------------------------------
 * Function : IDABBDPrecInit
 * -----------------------------------------------------------------
 * IDABBDPrecInit allocates and initializes the BBD preconditioner.
 *
 * The parameters of IDABBDPrecInit are as follows:
 *
 * ida_mem  is a pointer to the memory blockreturned by IDACreate.
 *
 * Nlocal  is the length of the local block of the vectors yy etc.
 *         on the current processor.
 *
 * mudq, mldq  are the upper and lower half-bandwidths to be used
 *             in the computation of the local Jacobian blocks.
 *
 * mukeep, mlkeep are the upper and lower half-bandwidths to be
 *                used in saving the Jacobian elements in the local
 *                block of the preconditioner matrix PP.
 *
 * dq_rel_yy is an optional input. It is the relative increment
 *           to be used in the difference quotient routine for
 *           Jacobian calculation in the preconditioner. The
 *           default is sqrt(unit roundoff), and specified by
 *           passing dq_rel_yy = 0.
 *
 * Gres    is the name of the user-supplied function G(t,y,y')
 *         that approximates F and whose local Jacobian blocks
 *         are to form the preconditioner.
 *
 * Gcomm   is the name of the user-defined function that performs
 *         necessary interprocess communication for the
 *         execution of glocal.
 *
 * The return value of IDABBDPrecInit is one of:
 *   IDASPILS_SUCCESS if no errors occurred
 *   IDASPILS_MEM_NULL if the integrator memory is NULL
 *   IDASPILS_LMEM_NULL if the linear solver memory is NULL
 *   IDASPILS_ILL_INPUT if an input has an illegal value
 *   IDASPILS_MEM_FAIL if a memory allocation request failed
 * -----------------------------------------------------------------
 */

SUNDIALS_EXPORT int IDABBDPrecInit(void *ida_mem, long int Nlocal,
                                   long int mudq, long int mldq,
                                   long int mukeep, long int mlkeep,
                                   realtype dq_rel_yy,
                                   IDABBDLocalFn Gres, IDABBDCommFn Gcomm);

/*
 * -----------------------------------------------------------------
 * Function : IDABBDPrecReInit
 * -----------------------------------------------------------------
 * IDABBDPrecReInit reinitializes the IDABBDPRE module when
 * solving a sequence of problems of the same size with
 * IDASPGMR/IDABBDPRE, IDASPBCG/IDABBDPRE, or IDASPTFQMR/IDABBDPRE
 * provided there is no change in Nlocal, mukeep, or mlkeep. After
 * solving one problem, and after calling IDAReInit to reinitialize
 * the integrator for a subsequent problem, call IDABBDPrecReInit.
 *
 * All arguments have the same names and meanings as those
 * of IDABBDPrecInit.
 *
 * The return value of IDABBDPrecReInit is one of:
 *   IDASPILS_SUCCESS if no errors occurred
 *   IDASPILS_MEM_NULL if the integrator memory is NULL
 *   IDASPILS_LMEM_NULL if the linear solver memory is NULL
 *   IDASPILS_PMEM_NULL if the preconditioner memory is NULL
 * -----------------------------------------------------------------
 */

SUNDIALS_EXPORT int IDABBDPrecReInit(void *ida_mem,
				     long int mudq, long int mldq,
				     realtype dq_rel_yy);

/*
 * -----------------------------------------------------------------
 * Optional outputs for IDABBDPRE
 * -----------------------------------------------------------------
 * IDABBDPrecGetWorkSpace returns the real and integer work space
 *                        for IDABBDPRE.
 * IDABBDPrecGetNumGfnEvals returns the number of calls to the
 *                          user Gres function.
 * 
 * The return value of IDABBDPrecGet* is one of:
 *   IDASPILS_SUCCESS if no errors occurred
 *   IDASPILS_MEM_NULL if the integrator memory is NULL
 *   IDASPILS_LMEM_NULL if the linear solver memory is NULL
 *   IDASPILS_PMEM_NULL if the preconditioner memory is NULL
 * -----------------------------------------------------------------
 */

SUNDIALS_EXPORT int IDABBDPrecGetWorkSpace(void *ida_mem, 
                                           long int *lenrwBBDP, long int *leniwBBDP);
SUNDIALS_EXPORT int IDABBDPrecGetNumGfnEvals(void *ida_mem, long int *ngevalsBBDP);

/* 
 * =================================================================
 * PART II - backward problems
 * =================================================================
 */

/*
 * -----------------------------------------------------------------
 * Types: IDALocalFnB and IDACommFnB
 * -----------------------------------------------------------------
 * Local approximation function and inter-process communication
 * function for the BBD preconditioner on the backward phase.
 * -----------------------------------------------------------------
 */
typedef int (*IDABBDLocalFnB)(long int NlocalB, realtype tt,
			      N_Vector yy, N_Vector yp, 
			      N_Vector yyB, N_Vector ypB, N_Vector gvalB,
			      void *user_dataB);

typedef int (*IDABBDCommFnB)(long int NlocalB, realtype tt,
			     N_Vector yy, N_Vector yp,
			     N_Vector yyB, N_Vector ypB,
			     void *user_dataB);

/*
 * -----------------------------------------------------------------
 * Functions: IDABBDPrecInitB, IDABBDPrecReInit
 * -----------------------------------------------------------------
 * Interface functions for the IDABBDPRE preconditioner to be used
 * on the backward phase.
 * -----------------------------------------------------------------
 */

SUNDIALS_EXPORT int IDABBDPrecInitB(void *ida_mem, int which, long int NlocalB,
                                    long int mudqB, long int mldqB,
                                    long int mukeepB, long int mlkeepB,
                                    realtype dq_rel_yyB,
                                    IDABBDLocalFnB GresB, IDABBDCommFnB GcommB);

SUNDIALS_EXPORT int IDABBDPrecReInitB(void *ida_mem, int which, 
                                      long int mudqB, long int mldqB, realtype dq_rel_yyB);

#ifdef __cplusplus
}
#endif

#endif