/usr/include/ncbi/salparam.h is in libvibrant6-dev 6.1.20120620-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 | /* salparam.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: salparam.h
*
* Author: Colombe Chappey
*
* Version Creation Date: 1/27/96
*
* $Revision: 6.10 $
*
* File Description:
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
*
*
* ==========================================================================
*/
#ifndef _SALPARAM_
#define _SALPARAM_
#include <salsa.h>
#include <vibrant.h>
#ifdef __cplusplus
extern "C" {
#endif
/*********************************
*** SeqFontProc
***********************************/
extern void SeqFontProc (IteM i);
/*********************************
*** SelectColorProc
***********************************/
extern void setUpLetterColor ( Uint4 *colorRefs, Uint1 letter,
Uint1 red, Uint1 green, Uint1 blue );
/************************************
*** Translation
*************************************/
extern void rf1ItemProc (IteM i);
extern void rf2ItemProc (IteM i);
extern void rf3ItemProc (IteM i);
extern void rf4ItemProc (IteM i);
extern void rf5ItemProc (IteM i);
extern void rf6ItemProc (IteM i);
extern void rf7ItemProc (IteM i);
extern void rf8ItemProc (IteM i);
extern void rf9ItemProc (IteM i);
extern void rf10ItemProc (IteM i);
/************************************
*** Dialog Boxes
*************************************/
extern void FileInProc (ButtoN b);
extern void DefinePanelDialog (IteM i);
/*
typedef struct simpamdlg{
Boolean ok;
}SimPamDlg, PNTR SimPamDlgPtr;
extern Boolean Sim2PamDialog (SimPamPtr spp);
*/
/**********************************************
***
*** AlignDataSet_Restore
*** Inval Rect
*** RestorePort
***
**********************************************/
extern void inval_panel (PaneL pnl, Int2 x, Int2 y);
extern void inval_window (WindoW w);
extern void inval_rect (Int2 left, Int2 top, Int2 right, Int2 bottom);
extern void inval_allines (EditAlignDataPtr adp, RecT *rp);
extern void inval_selstruct (EditAlignDataPtr adp, Uint2 ei, Uint4 ii, Uint2 it, Uint2 itemsubtype, RecT *rp, Int2 left, Int2 toright);
extern void inval_selstructpos (EditAlignDataPtr adp, Uint2 ei, Uint4 ii, Uint2 it, RecT *rp, Int4 pos);
extern void inval_selstructpos_tobottom (EditAlignDataPtr adp, Uint2 ei, Uint4 ii, Uint2 it, RecT *rp, Int4 pos);
extern void inval_selstructloc (EditAlignDataPtr adp, Uint2 ei, Uint4 ii, Uint2 it, Uint2 itemsubtype, RecT *rp, Int4 from, Int4 to);
extern void inval_selstructloc_forfeat (EditAlignDataPtr adp, Uint2 ei, Uint4 ii, Uint2 it, Uint2 itemsubtype, RecT *rp, Int4 from, Int4 to);
extern void inval_rectidselected (EditAlignDataPtr adp, RecT *rp);
extern void inval_pep (EditAlignDataPtr adp, RecT *rp);
extern void inval_all (EditAlignDataPtr adp, RecT *rp, Uint2 itemtype1, Uint2 itemtype2, Uint2 itemtype3, Int2 width);
extern void FormulaDialog (IteM i);
extern void FindPatternDialog (IteM i);
extern void DotPlotDialog (IteM i);
extern void DotPlotItem (IteM i);
extern void ExportTextFunc (ButtoN b);
extern void SalsaExportDialog (IteM i);
extern void SelectSeqDialog (IteM i);
extern void SelectRegionDialog (IteM i);
extern void ColorIdentityDialog (WindoW w);
extern void ColorIdentityDialogItem (IteM i);
NLM_EXTERN void PropagateFeatDialog (IteM i);
extern ValNodePtr JK_NTPattern (CharPtr pattern, ValNodePtr sqloc_list, Boolean flagInvert, Uint1 mol_type);
extern ValNodePtr JK_NTPattern2 (CharPtr pattern, ValNodePtr sqloc_list, Boolean flagInvert, Uint2 entityID);
extern ValNodePtr JK_NTPattern2Ex (CharPtr pattern, ValNodePtr sqloc_list, Boolean flagInvert, Uint2 entityID, Uint1 pick_frame);
#ifdef __cplusplus
}
#endif
#endif
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