/usr/include/ncbi/seqgrphx.h is in libvibrant6-dev 6.1.20120620-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 | #ifndef _SEQGRPHX_
#define _SEQGRPHX_
#ifdef __cplusplus
extern "C" {
#endif
/* structures */
typedef struct seqgraphview
{
FORM_MESSAGE_BLOCK
BioseqPtr bsp;
GrouP ftype, mtype, ptype;
Uint2 entityID, procID, userKEY;
Uint4 itemID;
} SeqGraphView, PNTR SeqGraphViewPtr;
/* prototypes */
Int2 LIBCALLBACK FilterCompGCFunc (Pointer data);
Int2 LIBCALLBACK FilterDustFunc (Pointer data);
Int2 LIBCALLBACK PCCPredictFunc (Pointer data);
Int2 LIBCALLBACK HydrophilicFunc (Pointer data);
Int2 LIBCALLBACK HydrophobicFunc (Pointer data);
/* Int2 LIBCALLBACK SeqAnalFunc (Pointer data); */
/* sequinx defines */
#define REGISTER_GROUP_FILTERGC ObjMgrProcLoadEx (OMPROC_FILTER, \
"Percent GC", "GCFilter", \
OBJ_BIOSEQ, 0, OBJ_BIOSEQ, 0, \
NULL, FilterCompGCFunc, PROC_PRIORITY_DEFAULT, "Analysis")
#define REGISTER_GROUP_DUST ObjMgrProcLoadEx (OMPROC_FILTER, \
"DUST", "Dust", \
OBJ_BIOSEQ, 0, OBJ_BIOSEQ, 0, \
NULL, FilterDustFunc, PROC_PRIORITY_DEFAULT, "Analysis")
#define REGISTER_GROUP_PCC ObjMgrProcLoadEx (OMPROC_FILTER, \
"Coiled-coil", "Coiled-coil", \
OBJ_SEQFEAT, 0, OBJ_SEQFEAT, 0, \
NULL, PCCPredictFunc, PROC_PRIORITY_DEFAULT, "Analysis")
#define REGISTER_GROUP_HOPP ObjMgrProcLoadEx (OMPROC_FILTER, \
"Hopp-Woods", "Antigenicity", \
OBJ_SEQFEAT, 0, OBJ_SEQFEAT, 0, \
NULL, HydrophilicFunc, PROC_PRIORITY_DEFAULT, "Analysis")
#define REGISTER_GROUP_KYTE ObjMgrProcLoadEx (OMPROC_FILTER, \
"Kyte-Doolittle", "Hydropathy", \
OBJ_SEQFEAT, 0, OBJ_SEQFEAT, 0, \
NULL, HydrophobicFunc, PROC_PRIORITY_DEFAULT, "Analysis")
/*
#define REGISTER_GROUP_ANALYSE ObjMgrProcLoadEx (OMPROC_FILTER, \
"Sequence Analysis", "Sequence Analysis", \
OBJ_BIOSEQ, 0, OBJ_BIOSEQ, 0, \
NULL, SeqAnalFunc, PROC_PRIORITY_DEFAULT, "Analysis")
*/
#ifdef __cplusplus
}
#endif
#endif
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