/usr/include/ncbi/seqpanel.h is in libvibrant6-dev 6.1.20120620-7.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 | /* $Id: seqpanel.h,v 6.24 2010/12/06 17:16:46 bollin Exp $
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* Author: Vlad Lebedev
**
* ==========================================================================
*/
#ifndef seqpanel_h
#define seqpanel_h
extern PaneL CreateSeqViewPanel (GrouP g, Int2 w, Int2 h);
extern void UpdateSeqViewPanel (PaneL pnl);
extern void WriteAlignmentContiguousToFile
(SeqAlignPtr salp,
FILE *fp,
Int4 seq_chars_per_row,
Boolean show_substitutions);
extern void
WriteAlignmentInterleaveToFile
(SeqAlignPtr salp,
FILE *fp,
Int4 seq_chars_per_row,
Boolean show_substitutions);
extern void
WriteAlignmentInterleaveToFileEx
(SeqAlignPtr salp,
FILE *fp,
Int4 seq_chars_per_row,
Boolean show_substitutions,
Boolean show_coordinates);
extern ForM CreateSeqEditorWindow (Int2 left, Int2 top, CharPtr windowname, BioseqPtr bsp);
NLM_EXTERN SeqAlignPtr Sequin_GlobalAlign2Seq (BioseqPtr bsp1, BioseqPtr bsp2, BoolPtr revcomp);
extern ForM CreateAlnEditorWindow (Int2 left, Int2 top, CharPtr windowname, SeqAlignPtr salp, Uint2 entityID);
extern ForM
CreateAlnEditorWindowEx
(Int2 left, Int2 top, CharPtr windowname, SeqAlignPtr salp, Uint2 entityID,
Nlm_ChangeNotifyProc on_close_func, Pointer on_close_data);
NLM_EXTERN void RemoveSeqEdCloseFunc (WindoW w);
NLM_EXTERN void SeqAlnWindowScrollToAlnPos (WindoW w, Int4 aln_pos, Int4 seq_num);
NLM_EXTERN CharPtr FeatureLocationAlignment (SeqFeatPtr sfp, SeqAlignPtr salp, Int4 begin, Int4 fin);
extern void FlipAlignment (SeqAlignPtr salp);
NLM_EXTERN Boolean CloseAlignmentEditor(Uint2 entityID, Uint4 itemID);
#endif
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