mafft 7.123-1 / usr / share / doc / mafft / test / sample.dpparttree

This file is indexed.

/usr/share/doc/mafft/test/sample.dpparttree is in mafft 7.123-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
MNG---------------------------------------------------------
-TE--GDNFYVPF-----------------SNKTGLARSPYEYPQ---------Y-YLAE
PWK---------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANL
FMVLFGF-TVTMYTS-MN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVI
CKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDY
YTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE---------------
------------------------------------------------------------
-----------------------------------------------------------A
AAAQQ---------------------------------ESASTQKAEKEVTRMVVLMVIG
FLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCM
ITTLCC-------GKNPLGD-DE---SGASTSKT------------------------EV
SSVS--------------------------------------------------------
------TSPVSP-A---
>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
MNG---------------------------------------------------------
-TE--GPNFYVPF-----------------SNITGVVRSPFEQPQ---------Y-YLAE
PWQ---------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADL
FMVFGGF-TTTLYTS-LH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVV
CKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDY
YTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE---------------
------------------------------------------------------------
-----------------------------------------------------------A
AAQQQ---------------------------------ESATTQKAEKEVTRMVIIMVIF
FLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCM
LTSLCC-------GKNPLGD-DE---ASATASKT------------------------E-
------------------------------------------------------------
------TSQVAP-A---
>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
MNG---------------------------------------------------------
-TE--GINFYVPM-----------------SNKTGVVRSPFEYPQ---------Y-YLAE
PWK---------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADL
FMACFGF-TVTFYTA-WN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVV
CKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDY
YTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE---------------
------------------------------------------------------------
-----------------------------------------------------------A
AAQQQ---------------------------------ESATTQKAEKEVTRMVILMVLG
FMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCM
ITTICC-------GKNPFGD-EDV-SSTVSQSKT------------------------EV
SSVS--------------------------------------------------------
------SSQVSP-A---
>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
MNG---------------------------------------------------------
-TE--GKNFYVPM-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
PWQ---------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGT
IMVCFGF-TVTFYTA-IN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
CKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDY
YTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA---------------
------------------------------------------------------------
-----------------------------------------------------------A
AAQQQ---------------------------------DSASTQKAEREVTKMVILMVFG
FLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCM
LTTIFC-------GKNPLGD-DE--SSTVSTSKT------------------------EV
SS----------------------------------------------------------
---------VSP-A---
>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
MNG---------------------------------------------------------
-TE--GNNFYVPL-----------------SNRTGLVRSPFEYPQ---------Y-YLAE
PWQ---------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGA
IMVCFGF-TVTFYTA-IN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVV
CKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDY
YTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA---------------
------------------------------------------------------------
-----------------------------------------------------------A
AAQQQ---------------------------------DSASTQKAEREVTKMVILMVLG
FLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCM
LTTLFC-------GKNPLGD-EE--SSTVSTSKT------------------------EV
SS----------------------------------------------------------
---------VSP-A---
>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
MKQ---------------------------------------------------------
-VPEFHEDFYIPIP-------------LDINNLS--AYSPFLVPQ---------D-HLGN
QGI---------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANL
FVAIFGS-PLSFYSF-FN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVI
CKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDW
YTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL---------------
------------------------------------------------------------
-----------------------------------------------------------A
AKAQA---------------------------------DSASTQKAEREVTKMVVVMVLG
FLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCM
M-KMVC-------GKN-IEE-DE---ASTSSQVT------------------------QV
SS----------------------------------------------------------
---------VAPEK---
>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
MRK---------------------------------------------------------
-MS--EEEFYL------------------FKNISSV--GPWDGPQ---------Y-HIAP
VWA---------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGF
LLCIFSV-FPVFVAS-CN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVI
CKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDW
YTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA---------------
------------------------------------------------------------
-----------------------------------------------------------V
AAQQQ---------------------------------ESATTQKAEREVSRMVVVMVGS
FCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACI
M-KMVC-------GKA-MTD-ES---DTCSSQKT------------------------EV
STVS--------------------------------------------------------
------STQVGP-N---
>     8=opsin, greensensitive  human (fragment) S07060
------------------------------------------------------------
------------------------------------------------------------
----------------------------------------------------------DL
AETVIAS-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
CKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
------------------------------------------------------------
-----------------------------------------------------------V
AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
FC----------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------
>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
MAQQWSLQRLA---------------------------------------GRHPQDSYED
STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
RWV---------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
AETVIAS-TISVVNQ-VY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVV
CKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
FSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA---------------
------------------------------------------------------------
-----------------------------------------------------------V
AKQQK---------------------------------ESESTQKAEKEVTRMVVVMVLA
FCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCI
LQLF---------GKK-VDD-GS---ELSSASKT------------------------EV
SSV---------------------------------------------------------
-------SSVSP-A---
>    10== Z68193   1 human Red Opsin <>[]
MAQQWSLQRLA---------------------------------------GRHPQDSYED
STQ--SSIFTYTN-----------------SNST---RGPFEGPN---------Y-HIAP
RWV---------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADL
AETVIAS-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVV
CKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
FSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA---------------
------------------------------------------------------------
-----------------------------------------------------------V
AKQQK---------------------------------ESESTQKAEKEVTRMVVVMIFA
YCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCI
LQLF---------GKK-VDD-GS---ELSSASKT------------------------EV
SSV---------------------------------------------------------
-------SSVSP-A---
>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
MTEAWNVAVFA---------------------------------------ARRSRDD-DD
TTR--GSVFTYTN-----------------TNNT---RGPFEGPN---------Y-HIAP
RWV---------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDL
VETLVAS-TISVFNQ-IF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVV
CKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDV
FSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA---------------
------------------------------------------------------------
-----------------------------------------------------------V
AAQQK---------------------------------ESESTQKAEREVSRMVVVMIVA
FCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCI
MQLF---------GKK-VDD-GS---EASTTSRT------------------------EV
SSVS--------------------------------------------------------
------NSSVAP-A---
>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
MAA-WEAAFAA---------------------------------------RRRHEE--ED
TTR--DSVFTYTN-----------------SNNT---RGPFEGPN---------Y-HIAP
RWV---------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADL
GETVIAS-TISVINQ-IS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVV
CKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDV
FSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA---------------
------------------------------------------------------------
-----------------------------------------------------------V
AAQQK---------------------------------ESESTQKAEKEVSRMVVVMIVA
YCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCI
LQLF---------GKK-VDD-GS---EVST-SRT------------------------EV
SSVS--------------------------------------------------------
------NSSVSP-A---
>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
MS--------------------------------------------------------SN
SSQ--AP-----------------------PNGT---PGPFDGPQ---------WPYQAP
QST---------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADL
LVTLCGS-SVSLSNN-IN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVV
CKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNW
YTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA---------------
------------------------------------------------------------
-----------------------------------------------------------A
AAQQK---------------------------------EADTTQRAEREVTRMVIVMVMA
FLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCL
LEMLCC----GYQPQR-TGK-AS---PGTPGPHA------------------------DV
TAAG--------------------------------------------------------
-----LRNKVMP-AHPV
>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
MESGNV-----------------------------------------------SSSLFGN
VSTALRPEARLSA---------ETRLLGW--------NVPPEELR-----------HIPE
HWLTYPEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDF
-MMMVKT-PIFIYNS-FH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVI
TRPMEGK--MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDY
LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------L
RDQAKK--------------------MNVESL---RSNVDKNKETAEIRIAKAAITICFL
FFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMEL
QKRCPW----LALNEKAPES--SAVASTSTTQEP------------------------QQ
T-----------------------------------------------------------
----------TA-A---
>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
MEYHNV-----------------------------------------------SSVL-GN
VSSVLRPDARLSA---------ESRLLGW--------NVPPDELR-----------HIPE
HWLIYPEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDF
-MMMIKT-PIFIYNS-FH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVI
TRPMEGK--MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDY
LT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------L
RDQAKK--------------------MNVDSL---RSNVDKSKEAAEIRIAKAAITICFL
FFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMEL
QKRCPW----LAISEKAPES--RAAISTSTTQEQ------------------------QQ
T-----------------------------------------------------------
----------TA-A---
>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
ME-----------------------------------------------------PLCNA
SEPPLRPEAR-SSG------NGDLQFLGW--------NVPPDQIQ-----------YIPE
HWLTQLEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
-IMCLKA-PIF--NS-FH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
TKPMNRN--MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
LS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------L
REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
FFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLEL
QKRCPW----LGVNEKSGEI--SSAQST-TTQEQ------------------------QQ
T-----------------------------------------------------------
----------TA-A---
>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
MD-----------------------------------------------------ALCNA
SEPPLRPEARMSSG------SDELQFLGW--------NVPPDQIQ-----------YIPE
HWLTQLEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDL
-IMCLKA-PIFIYNS-FH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVI
TKPMNRN--MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDY
LS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------L
REQAKK--------------------MNVESL---RSNVDKSKETAEIRIAKAAITICFL
FFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMEL
QKRCPW----LGVNEKSGEA--SSAQST-TTQEQ-----------------------TQQ
T-----------------------------------------------------------
----------SA-A---
>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
MT----------------------------------------------------------
--NATGPQMAYYGA------ASMD-F-GYPEGVSIVDFVRPEIKP-----------YVHQ
HWYNYPPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDL
IMLTTNV-PFFTYNC-FSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNII
CNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDY
LT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA---------------
------------------------------------------------------------
-----------------------------------------------------------M
RAQAKK--------------------MNVSTL---RS-NEADAQRAEIRIAKTALVNVSL
WFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAI
TQHLPW----FCVHETETKS-NDDSQSNSTVAQ---------------------------
------------------------------------------------------------
----------DK-A---
>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
MA----------------------------------------------------------
--NVTGPQMAFYGS------GAAT-F-GYPEGMTVADFVPDRVKH-----------MVLD
HWYNYPPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDL
IMLTTNF-PPFCYNC-FSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNII
CNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDY
FT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA---------------
------------------------------------------------------------
-----------------------------------------------------------M
RAQAKK--------------------MNVTNL---RS-NEAETQRAEIRIAKTALVNVSL
WFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAI
TQHLPW----FCVHEKDPND-VEENQSSNTQTQ---------------------------
------------------------------------------------------------
----------EK-S---
>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
ME------------------------------------------------------SFAV
AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
VKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCGIDY
LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------M
REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
KEKCPC----CVFGKVDDGK-SSDAQSQATASEA------------------------E-
------------------------------------------------------------
----------SK-A---
>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
ME------------------------------------------------------SFAV
AAAQLGPHFAPLS------------------NGSVVDKVTPDMAH-----------LISP
YWNQFPAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
VKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDY
LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------M
REQAKK--------------------MNVKSL---RS-SEDAEKSAEGKLAKVALVTITL
WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
KEKCPC----CVFGKVDDGK-SSDAQSQATASEA------------------------E-
------------------------------------------------------------
----------SK-A---
>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
MD------------------------------------------------------SFAA
VATQLGPQFAAPS------------------NGSVVDKVTPDMAH-----------LISP
YWDQFPAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDF
GIMITNT-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVI
VKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDY
LE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------M
REQAKK--------------------MNVKSL---RS-SEDADKSAEGKLAKVALVTISL
WFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLAL
KEKCPC----CVFGKVDDGK-SSEAQSQATTSEA------------------------E-
------------------------------------------------------------
----------SK-A---
>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
MERSHL-------------------------------------------------PETPF
DLAHSGPRFQAQSS------G----------NGSVLDNVLPDMAH-----------LVNP
YWSRFAPMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
CMMASQS-PVMIINF-YY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVI
VKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDY
MT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------M
REQAKK--------------------MNVKSL---RS-SEDCDKSAEGKLAKVALTTISL
WFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVL
KEKCPM----CVFGNTDEPKPDAPASDTETTSEA------------------------D-
------------------------------------------------------------
----------SK-A---
>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
MERSLL-------------------------------------------------PEPPL
AMALLGPRFEAQTG------G----------NRSVLDNVLPDMAP-----------LVNP
HWSRFAPMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDF
CMMASQS-PVMIINF-YY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVI
VKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDY
MT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA---------------
------------------------------------------------------------
-----------------------------------------------------------M
RDQAKK--------------------MNVKSL---RS-SEDCDKSAENKLAKVALTTISL
WFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVL
KEKCPM----CVCGTTDEPKPDAPPSDTETTSEA------------------------E-
------------------------------------------------------------
----------SK-D---
>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
MI----------------------------------------------------------
--AVSGPSYEAFSY------GGQARF----NNQTVVDKVPPDMLH-----------LIDA
NWYQYPPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNF
LMMFCMS-PPMVINC-YY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVI
VKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDY
FN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN---------------
------------------------------------------------------------
-----------------------------------------------------------M
REQAKK--------------------MNVASL---RS-SENQNTSAECKLAKVALMTISL
WFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAAL
FAKFPS----LAC-AAEPSS-DAVSTTSGTTTVT------------------------DN
EK----------------------------------------------------------
----------SN-A---
>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
M-----------------------------------------------------------
---ANQLSYSSLGW------PYQP-------NASVVDTMPKEMLY-----------MIHE
HWYAFPPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDF
CMMAFMM-PTMTSNC-FA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVI
VRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDY
LT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ---------------
------------------------------------------------------------
-----------------------------------------------------------L
REQAKK--------------------MNVASL---RANADQQKQSAECRLAKVAMMTVGL
WFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAAL
YQRFPS----LACGSGESGS-DVKSEASATTTME------------------------EK
PK----------------------------------------------------------
---------IPE-A---
>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
MVESTTL--------------------------------------------VNQ------
---------------------------TWWYNPTVD---------------------IHP
HWAKFDPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDL
SFSAINGFPLKTISA-FM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVI
GRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDY
LS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE---------------
------------------------------------------------------------
-----------------------------------------------------------M
AAMAKR--------------------LNAKEL---RK--AQAGASAEMKLAKISMVIITQ
FMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAI
QTTFPWLLTCCQFDEKECED-ANDAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQ
AAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQG
APPQGVDNQAYQ-A---
>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
MGRDLR---------------------------------------------DNE------
---------------------------TWWYNPSIV---------------------VHP
HWREFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDF
TFSLVNGFPLMTISC-FL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVI
GRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDY
IS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE---------------
------------------------------------------------------------
-----------------------------------------------------------M
AAMAKR--------------------LNAKEL---RK--AQAGANAEMRLAKISIVIVSQ
FLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAI
SQTFPWVLTCCQFDDKETED-DKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ
AAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPA
APPQGVDNQAYQ-A---
>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
MMDVNSSGRPDLY----GHLRSFLLP--EVGRGLPDLSPDGGADPVAGSWAPHLLS---E
VTASPAPTW----------------------------DAPPDNAS--GCGEQINY-----
--------GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADL
SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
-----PGF---------------------------------PRVEPDSVI----------
------------ALNGIVK----------------------LQKEVEECAN--------L
SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTY
RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
PEFVLQ------------------------------------------------------
-----NADYCRKKGHDS
>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
M--------------------------------------------------PHLLSGFLE
VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
--------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
-----PGF---------------------------------PRVQPESVI----------
------------SLNGVVK----------------------LQKEVEECAN--------L
SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTS
RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
SEFVLQ------------------------------------------------------
-----NSDHCGKKGHDT
>    31=p A47425 serotonin receptor 5HT-7 - rat
M--------------------------------------------------PHLLSGFLE
VTASPAPTW----------------------------DAPPDNVS--GCGEQINY-----
--------GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADL
SVAVAVM-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGI
TRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VCLIS-
-------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF------------
-----PGF---------------------------------PRVQPESVI----------
------------SLNGVVK----------------------LQKEVEECAN--------L
SRLLKH-----------------------------ER-KNISIFKREQKAATTLGIIVGA
FTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTY
RSLLQC--QYRNINRK---------LSAAGMHEA---------------LKLAERP--ER
SEFVLQ------------------------------------------------------
-----NSDHCGKKGHDT
>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
M-DVLSPGQ--------GNNTTSPPAPFETGGNTTGI-----------------------
--SDVTVSY---------------------------------------------------
------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
MVSVLVL-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
-------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWR
LGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP-----
ASFERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
FILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
KKIIKC--KFCR------------------------------------------------
------------------------------------------------------------
----------------Q
>    33=p A35181 serotonin receptor class 1A - rat
M-DVFSFGQ--------GNNTTASQEPFGTGGNVTSI-----------------------
--SDVTFSY---------------------------------------------------
------------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDL
MVSVLVL-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAI
TDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---ACTIS-
-------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK---------------
------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGSGDWR
RCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP-----
ACLERK-----------NERNA-------------EA-KRKMALARERKTVKTLGIIMGT
FILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAF
KKIIKC--KFCR------------------------------------------------
------------------------------------------------------------
----------------R
>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
VTSDFNDSYGLTGQFINGSHSSRSR-----DNASAN-DTSATNMTDDRYWSLTVY-----
--------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
MVAVLVM-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
-------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
QKILFG--KYRRG-----------------------------------------------
------------------------------------------------------------
---------------HR
>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
M-ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------L
VTSDFNDSYGLTGQFINGSHSSRSR-----DNASAN-DTSATNMTDDRYWSLTVY-----
--------SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADL
MVAVLVM-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAV
TS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTCIIS-
-------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEET
TLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK------------
----NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEEAS-I
AMLERQ-CNNGKKISSNDTPYS-------------RT-REKLELKRERKAARTLAIITGA
FLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAF
QKILFG--KYRRG-----------------------------------------------
------------------------------------------------------------
---------------HR
>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
M-EGAE-GQEELD----WEALYLRLPLQNCSWNSTGWEPNW------------------N
VTVVPNTTW---------------------WQASAPFDTPAALVR---------------
------------AAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADL
LVACLVM-PLGAVYE-VV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAV
TN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RCVVS-
-------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR---------------
------------------------------RRGATARGGVGPPPVP--------------
-------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNVSSNN
TSPEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKTLAIITGA
FVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAF
QRLLCG--RRVRRRR---------------------------------------------
------------------------------------------------------------
--------------APQ

APT Browse - Built by Thomas Orozco.