/usr/share/doc/mlv-smile/param_delta is in mlv-smile 1.47-3.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | ## In the following example, we use "deltas". It means that the model we
## look for must respect the following criteria:
FASTA file fasta
Output file delta
Alphabet file alphabet
Quorum 70
Total min length 5
Total max length 6
Total substitutions 0
Boxes 2
BOX 1
Min length 2
Max length 3
Substitutions 0
Min spacer length 2
Max spacer length 8
Delta 1
## here we want a jump of d plus or minus delta between the 2 boxes
#$ where d can take a value from 3 to 7. Here, the generated ranges will be:
## [2-4], [3-5], [4-6], [5-7], [6-8].
## As many output files will be generated as the number of possible
## ranges.
BOX 2
Min length 3
Max length 3
Substitutions 0
## Here you can add the evaluation step, each output file will be evaluated.
Shufflings 2
Size k-mer 1
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