This file is indexed.

/usr/share/pyshared/obnamlib/clientmetadatatree.py is in obnam 1.6.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
# Copyright 2010  Lars Wirzenius
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.


import hashlib
import logging
import os
import random
import struct
import tracing

import obnamlib


class ClientMetadataTree(obnamlib.RepositoryTree):

    '''Store per-client metadata about files.

    Actual file contents is stored elsewhere, this stores just the
    metadata about files: names, inode info, and what chunks of
    data they use.

    See http://braawi.org/obnam/ondisk/ for a description of how
    this works.

    '''

    # Filesystem metadata.
    PREFIX_FS_META = 0      # prefix
    FILE_NAME = 0           # subkey type for storing pathnames
    FILE_CHUNKS = 1         # subkey type for list of chunks
    FILE_METADATA = 3       # subkey type for inode fields, etc
    DIR_CONTENTS = 4        # subkey type for list of directory contents
    FILE_DATA = 5           # subkey type for file data (instead of chunk)

    FILE_METADATA_ENCODED = 0 # subkey value for encoded obnamlib.Metadata().

    # References to chunks in this generation.
    # Main key is the chunk id, subkey type is always 0, subkey is file id
    # for file that uses the chunk.
    PREFIX_CHUNK_REF = 1

    # Metadata about the generation. The main key is always the hash of
    # 'generation', subkey type field is always 0.
    PREFIX_GEN_META = 2     # prefix
    GEN_ID = 0              # subkey type for generation id
    GEN_STARTED = 1         # subkey type for when generation was started
    GEN_ENDED = 2           # subkey type for when generation was ended
    GEN_IS_CHECKPOINT = 3   # subkey type for whether generation is checkpoint
    GEN_FILE_COUNT = 4      # subkey type for count of files+dirs in generation
    GEN_TOTAL_DATA = 5      # subkey type for sum of all file sizes in gen

    # Maximum values for the subkey type field, and the subkey field.
    # Both have a minimum value of 0.

    TYPE_MAX = 255
    SUBKEY_MAX = struct.pack('!Q', obnamlib.MAX_ID)

    def __init__(self, fs, client_dir, node_size, upload_queue_size, lru_size,
                 repo):
        tracing.trace('new ClientMetadataTree, client_dir=%s' % client_dir)
        self.current_time = repo.current_time
        key_bytes = len(self.hashkey(0, self.default_file_id(''), 0, 0))
        obnamlib.RepositoryTree.__init__(self, fs, client_dir, key_bytes,
                                         node_size, upload_queue_size,
                                         lru_size, repo)
        self.genhash = self.default_file_id('generation')
        self.chunkids_per_key = max(1,
                                    int(node_size / 4 / struct.calcsize('Q')))
        self.init_caches()

    def init_caches(self):
        self.known_generations = {}
        self.file_ids = {}

    def default_file_id(self, filename):
        '''Return hash of filename suitable for use as main key.'''
        tracing.trace(repr(filename))
        def hash(s):
            return hashlib.md5(s).digest()[:4]
        dirname = os.path.dirname(filename)
        basename = os.path.basename(filename)
        return hash(dirname) + hash(basename)

    def _bad_default_file_id(self, filename):
        '''For use by unit tests.'''
        return struct.pack('!Q', 0)

    def hashkey(self, prefix, mainhash, subtype, subkey):
        '''Compute a full key.

        The full key consists of three parts:

        * prefix (0 for filesystem metadata, 1 for chunk refs)
        * a hash of mainkey (64 bits)
        * the subkey type (8 bits)
        * type subkey (64 bits)

        These are catenated.

        mainhash must be a string of 8 bytes.

        subtype must be an integer in the range 0.255, inclusive.

        subkey must be either a string or an integer. If it is a string,
        it will be padded with NUL bytes at the end, if it is less than
        8 bytes, and truncated, if longer. If it is an integer, it will
        be converted as a string, and the value must fit into 64 bits.

        '''

        if type(subkey) == str:
            subkey = (subkey + '\0' * 8)[:8]
            fmt = '!B8sB8s'
        else:
            assert type(subkey) in [int, long]
            fmt = '!B8sBQ'

        return struct.pack(fmt, prefix, mainhash, subtype, subkey)

    def fskey(self, mainhash, subtype, subkey):
        ''''Generate key for filesystem metadata.'''
        return self.hashkey(self.PREFIX_FS_META, mainhash, subtype, subkey)

    def fs_unkey(self, key):
        '''Inverse of fskey.'''
        parts = struct.unpack('!B8sB8s', key)
        return parts[1], parts[3]

    def genkey(self, subkey):
        '''Generate key for generation metadata.'''
        return self.hashkey(self.PREFIX_GEN_META, self.genhash, 0, subkey)

    def int2bin(self, integer):
        '''Convert an integer to a binary string representation.'''
        return struct.pack('!Q', integer)

    def chunk_key(self, chunk_id, file_id):
        '''Generate a key for a chunk reference.'''
        return self.hashkey(self.PREFIX_CHUNK_REF, self.int2bin(chunk_id),
                            0, file_id)

    def chunk_unkey(self, key):
        '''Return the chunk and file ids in a chunk key.'''
        parts = struct.unpack('!BQBQ', key)
        return parts[1], parts[3]

    def get_file_id(self, tree, pathname):
        '''Return id for file in a given generation.'''

        if tree in self.file_ids:
            if pathname in self.file_ids[tree]:
                return self.file_ids[tree][pathname]
        else:
            self.file_ids[tree] = {}

        default_file_id = self.default_file_id(pathname)
        minkey = self.fskey(default_file_id, self.FILE_NAME, 0)
        maxkey = self.fskey(default_file_id, self.FILE_NAME, obnamlib.MAX_ID)
        for key, value in tree.lookup_range(minkey, maxkey):
            def_id, file_id = self.fs_unkey(key)
            assert def_id == default_file_id, \
                'def=%s other=%s' % (repr(def_id), repr(default_file_id))
            self.file_ids[tree][value] = file_id
            if value == pathname:
                return file_id

        raise KeyError('%s does not yet have a file-id' % pathname)

    def set_file_id(self, pathname):
        '''Set and return the file-id for a file in current generation.'''

        default_file_id = self.default_file_id(pathname)
        minkey = self.fskey(default_file_id, self.FILE_NAME, 0)
        maxkey = self.fskey(default_file_id, self.FILE_NAME, obnamlib.MAX_ID)
        file_ids = set()
        for key, value in self.tree.lookup_range(minkey, maxkey):
            def_id, file_id = self.fs_unkey(key)
            assert def_id == default_file_id
            if value == pathname:
                return file_id
            file_ids.add(file_id)

        while True:
            n = random.randint(0, obnamlib.MAX_ID)
            file_id = struct.pack('!Q', n)
            if file_id not in file_ids:
                break

        key = self.fskey(default_file_id, self.FILE_NAME, file_id)
        self.tree.insert(key, pathname)
        return file_id

    def _lookup_int(self, tree, key):
        return struct.unpack('!Q', tree.lookup(key))[0]

    def _insert_int(self, tree, key, value):
        return tree.insert(key, struct.pack('!Q', value))

    def commit(self):
        tracing.trace('committing ClientMetadataTree')
        if self.tree:
            now = int(self.current_time())
            self._insert_int(self.tree, self.genkey(self.GEN_ENDED), now)
            genid = self._get_generation_id_or_None(self.tree)
            if genid is not None:
                t = [(self.GEN_FILE_COUNT, 'file_count'),
                     (self.GEN_TOTAL_DATA, 'total_data')]
                for subkey, attr in t:
                    if hasattr(self, attr):
                        self._insert_count(genid, subkey, getattr(self, attr))
        obnamlib.RepositoryTree.commit(self)

    def init_forest(self, *args, **kwargs):
        self.init_caches()
        return obnamlib.RepositoryTree.init_forest(self, *args, **kwargs)

    def start_changes(self, *args, **kwargs):
        self.init_caches()
        return obnamlib.RepositoryTree.start_changes(self, *args, **kwargs)

    def find_generation(self, genid):

        def fill_cache():
            key = self.genkey(self.GEN_ID)
            for t in self.forest.trees:
                t_genid = self._lookup_int(t, key)
                if t_genid == genid:
                    self.known_generations[genid] = t
                    return t

        if self.forest:
            if genid in self.known_generations:
                return self.known_generations[genid]
            t = fill_cache()
            if t is not None:
                return t
        raise KeyError('Unknown generation %s' % genid)

    def list_generations(self):
        if self.forest:
            genids = []
            for t in self.forest.trees:
                genid = self._get_generation_id_or_None(t)
                if genid is not None:
                    genids.append(genid)
            return genids
        else:
            return []

    def start_generation(self):
        tracing.trace('start new generation')
        self.start_changes()
        gen_id = self.forest.new_id()
        now = int(self.current_time())
        self._insert_int(self.tree, self.genkey(self.GEN_ID), gen_id)
        self._insert_int(self.tree, self.genkey(self.GEN_STARTED), now)
        self.file_count = self.get_generation_file_count(gen_id) or 0
        self.total_data = self.get_generation_data(gen_id) or 0

    def set_current_generation_is_checkpoint(self, is_checkpoint):
        tracing.trace('is_checkpoint=%s', is_checkpoint)
        value = 1 if is_checkpoint else 0
        key = self.genkey(self.GEN_IS_CHECKPOINT)
        self._insert_int(self.tree, key, value)

    def get_is_checkpoint(self, genid):
        tree = self.find_generation(genid)
        key = self.genkey(self.GEN_IS_CHECKPOINT)
        try:
            return self._lookup_int(tree, key)
        except KeyError:
            return 0

    def remove_generation(self, genid):
        tracing.trace('genid=%s', genid)
        tree = self.find_generation(genid)
        if tree == self.tree:
            self.tree = None
        self.forest.remove_tree(tree)

    def get_generation_id(self, tree):
        return self._lookup_int(tree, self.genkey(self.GEN_ID))

    def _get_generation_id_or_None(self, tree):
        try:
            return self.get_generation_id(tree)
        except KeyError: # pragma: no cover
            return None

    def _lookup_time(self, tree, what):
        try:
            return self._lookup_int(tree, self.genkey(what))
        except KeyError:
            return None

    def get_generation_times(self, genid):
        tree = self.find_generation(genid)
        return (self._lookup_time(tree, self.GEN_STARTED),
                self._lookup_time(tree, self.GEN_ENDED))

    def get_generation_data(self, genid):
        return self._lookup_count(genid, self.GEN_TOTAL_DATA)

    def _lookup_count(self, genid, count_type):
        tree = self.find_generation(genid)
        key = self.genkey(count_type)
        try:
            return self._lookup_int(tree, key)
        except KeyError:
            return None

    def _insert_count(self, genid, count_type, count):
        tree = self.find_generation(genid)
        key = self.genkey(count_type)
        return self._insert_int(tree, key, count)

    def get_generation_file_count(self, genid):
        return self._lookup_count(genid, self.GEN_FILE_COUNT)

    def create(self, filename, encoded_metadata):
        tracing.trace('filename=%s', filename)
        file_id = self.set_file_id(filename)
        gen_id = self.get_generation_id(self.tree)
        try:
            old_metadata = self.get_metadata(gen_id, filename)
        except KeyError:
            old_metadata = None
            self.file_count += 1
        else:
            old = obnamlib.decode_metadata(old_metadata)
            if old.isfile():
                self.total_data -= old.st_size or 0

        metadata = obnamlib.decode_metadata(encoded_metadata)
        if metadata.isfile():
            self.total_data += metadata.st_size or 0

        if encoded_metadata != old_metadata:
            tracing.trace('new or changed metadata')
            self.set_metadata(filename, encoded_metadata)

        # Add to parent's contents, unless already there.
        parent = os.path.dirname(filename)
        tracing.trace('parent=%s', parent)
        if parent != filename: # root dir is its own parent
            basename = os.path.basename(filename)
            parent_id = self.set_file_id(parent)
            key = self.fskey(parent_id, self.DIR_CONTENTS, file_id)
            # We could just insert, but that would cause unnecessary
            # churn in the tree if nothing changes.
            try:
                self.tree.lookup(key)
                tracing.trace('was already in parent') # pragma: no cover
            except KeyError:
                self.tree.insert(key, basename)
                tracing.trace('added to parent')

    def get_metadata(self, genid, filename):
        tree = self.find_generation(genid)
        file_id = self.get_file_id(tree, filename)
        key = self.fskey(file_id, self.FILE_METADATA,
                         self.FILE_METADATA_ENCODED)
        return tree.lookup(key)

    def set_metadata(self, filename, encoded_metadata):
        tracing.trace('filename=%s', filename)

        file_id = self.set_file_id(filename)
        key1 = self.fskey(file_id, self.FILE_NAME, file_id)
        self.tree.insert(key1, filename)

        key2 = self.fskey(file_id, self.FILE_METADATA,
                          self.FILE_METADATA_ENCODED)
        self.tree.insert(key2, encoded_metadata)

    def remove(self, filename):
        tracing.trace('filename=%s', filename)

        file_id = self.get_file_id(self.tree, filename)
        genid = self.get_generation_id(self.tree)
        self.file_count -= 1

        try:
            encoded_metadata = self.get_metadata(genid, filename)
        except KeyError:
            pass
        else:
            metadata = obnamlib.decode_metadata(encoded_metadata)
            if metadata.isfile():
                self.total_data -= metadata.st_size or 0

        # Remove any children.
        minkey = self.fskey(file_id, self.DIR_CONTENTS, 0)
        maxkey = self.fskey(file_id, self.DIR_CONTENTS, obnamlib.MAX_ID)
        for key, basename in self.tree.lookup_range(minkey, maxkey):
            self.remove(os.path.join(filename, basename))

        # Remove chunk refs.
        for chunkid in self.get_file_chunks(genid, filename):
            key = self.chunk_key(chunkid, file_id)
            self.tree.remove_range(key, key)

        # Remove this file's metadata.
        minkey = self.fskey(file_id, 0, 0)
        maxkey = self.fskey(file_id, self.TYPE_MAX, self.SUBKEY_MAX)
        self.tree.remove_range(minkey, maxkey)

        # Remove filename.
        default_file_id = self.default_file_id(filename)
        key = self.fskey(default_file_id, self.FILE_NAME, file_id)
        self.tree.remove_range(key, key)

        # Also remove from parent's contents.
        parent = os.path.dirname(filename)
        if parent != filename: # root dir is its own parent
            parent_id = self.set_file_id(parent)
            key = self.fskey(parent_id, self.DIR_CONTENTS, file_id)
            # The range removal will work even if the key does not exist.
            self.tree.remove_range(key, key)

    def listdir(self, genid, dirname):
        tree = self.find_generation(genid)
        try:
            dir_id = self.get_file_id(tree, dirname)
        except KeyError:
            return []
        minkey = self.fskey(dir_id, self.DIR_CONTENTS, 0)
        maxkey = self.fskey(dir_id, self.DIR_CONTENTS, self.SUBKEY_MAX)
        basenames = []
        for key, value in tree.lookup_range(minkey, maxkey):
            basenames.append(value)
        return basenames

    def get_file_chunks(self, genid, filename):
        tree = self.find_generation(genid)
        try:
            file_id = self.get_file_id(tree, filename)
        except KeyError:
            return []
        minkey = self.fskey(file_id, self.FILE_CHUNKS, 0)
        maxkey = self.fskey(file_id, self.FILE_CHUNKS, self.SUBKEY_MAX)
        pairs = tree.lookup_range(minkey, maxkey)
        chunkids = []
        for key, value in pairs:
            chunkids.extend(self._decode_chunks(value))
        return chunkids

    def _encode_chunks(self, chunkids):
        fmt = '!' + ('Q' * len(chunkids))
        return struct.pack(fmt, *chunkids)

    def _decode_chunks(self, encoded):
        size = struct.calcsize('Q')
        count = len(encoded) / size
        fmt = '!' + ('Q' * count)
        return struct.unpack(fmt, encoded)

    def _insert_chunks(self, tree, file_id, i, chunkids):
        key = self.fskey(file_id, self.FILE_CHUNKS, i)
        encoded = self._encode_chunks(chunkids)
        tree.insert(key, encoded)

    def set_file_chunks(self, filename, chunkids):
        tracing.trace('filename=%s', filename)
        tracing.trace('chunkids=%s', repr(chunkids))

        file_id = self.set_file_id(filename)
        minkey = self.fskey(file_id, self.FILE_CHUNKS, 0)
        maxkey = self.fskey(file_id, self.FILE_CHUNKS, self.SUBKEY_MAX)

        for key, value in self.tree.lookup_range(minkey, maxkey):
            for chunkid in self._decode_chunks(value):
                k = self.chunk_key(chunkid, file_id)
                self.tree.remove_range(k, k)

        self.tree.remove_range(minkey, maxkey)

        self.append_file_chunks(filename, chunkids)

    def append_file_chunks(self, filename, chunkids):
        tracing.trace('filename=%s', filename)
        tracing.trace('chunkids=%s', repr(chunkids))

        file_id = self.set_file_id(filename)

        minkey = self.fskey(file_id, self.FILE_CHUNKS, 0)
        maxkey = self.fskey(file_id, self.FILE_CHUNKS, self.SUBKEY_MAX)
        i = self.tree.count_range(minkey, maxkey)

        while chunkids:
            some = chunkids[:self.chunkids_per_key]
            self._insert_chunks(self.tree, file_id, i, some)
            for chunkid in some:
                self.tree.insert(self.chunk_key(chunkid, file_id), '')
            i += 1
            chunkids = chunkids[self.chunkids_per_key:]

    def chunk_in_use(self, gen_id, chunk_id):
        '''Is a chunk used by a generation?'''

        minkey = self.chunk_key(chunk_id, 0)
        maxkey = self.chunk_key(chunk_id, obnamlib.MAX_ID)
        t = self.find_generation(gen_id)
        return not t.range_is_empty(minkey, maxkey)

    def list_chunks_in_generation(self, gen_id):
        '''Return list of chunk ids used in a given generation.'''

        minkey = self.chunk_key(0, 0)
        maxkey = self.chunk_key(obnamlib.MAX_ID, obnamlib.MAX_ID)
        t = self.find_generation(gen_id)
        return list(set(self.chunk_unkey(key)[0]
                        for key, value in t.lookup_range(minkey, maxkey)))

    def set_file_data(self, filename, contents): # pragma: no cover
        '''Store contents of file, if small, in B-tree instead of chunk.

        The length of the contents should be small enough to fit in a
        B-tree leaf.

        '''
        tracing.trace('filename=%s' % filename)
        tracing.trace('contents=%s' % repr(contents))

        file_id = self.set_file_id(filename)
        key = self.fskey(file_id, self.FILE_DATA, 0)
        self.tree.insert(key, contents)

    def get_file_data(self, gen_id, filename): # pragma: no cover
        '''Return contents of file, if set, or None.'''
        tree = self.find_generation(gen_id)
        file_id = self.get_file_id(tree, filename)
        key = self.fskey(file_id, self.FILE_DATA, 0)
        try:
            return tree.lookup(key)
        except KeyError:
            return None