octave-tsa 4.2.7-1build1 / usr / share / octave / packages / tsa-4.2.7 / histo3.m

function [R, tix] = histo3(Y, W)
% HISTO3 calculates histogram for multiple columns with common bin values 
%    among all data columns, and can be useful for data compression. 
%
% R = HISTO3(Y)
% R = HISTO3(Y, W)
%	Y	data
%	W	weight vector containing weights of each sample, 
%		number of rows of Y and W must match.
%		default W=[] indicates that each sample is weighted with 1. 
% 	R 	struct with these fields 
%       R.X  	the bin-values, bin-values are equal for each channel
%		thus R.X is a column vector. If bin values should 
%		be computed separately for each data column, use HISTO2
%       R.H  	is the frequency of occurence of value X 
%  	R.N  	are the number of valid (not NaN) samples 
%
% Data compression can be performed in this way
%   	[R,tix] = histo3(Y) 
%      		is the compression step
%
%	R.tix provides a compressed data representation. 
%	R.compressionratio estimates the compression ratio
%
% 	R.X(tix) and R.X(R.tix) 
%		reconstruct the orginal signal (decompression) 
%
% The effort (in memory and speed) for compression is O(n*log(n)).
% The effort (in memory and speed) for decompression is O(n) only. 
%
% see also: HISTO, HISTO2, HISTO3, HISTO4
%
% REFERENCE(S):
%  C.E. Shannon and W. Weaver "The mathematical theory of communication" University of Illinois Press, Urbana 1949 (reprint 1963).


%	$Id: histo3.m 11693 2013-03-04 06:40:14Z schloegl $
%	Copyright (C) 1996-2002,2008,2011 by Alois Schloegl <a.schloegl@ieee.org>	
%       This is part of the TSA-toolbox. See also 
%       http://pub.ist.ac.at/~schloegl/matlab/tsa/
%       http://octave.sourceforge.net/
%       http://biosig.sourceforge.net/
%
%    This program is free software: you can redistribute it and/or modify
%    it under the terms of the GNU General Public License as published by
%    the Free Software Foundation, either version 3 of the License, or
%    (at your option) any later version.
%
%    This program is distributed in the hope that it will be useful,
%    but WITHOUT ANY WARRANTY; without even the implied warranty of
%    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
%    GNU General Public License for more details.
%
%    You should have received a copy of the GNU General Public License
%    along with this program.  If not, see <http://www.gnu.org/licenses/>.


%%%%% check input arguments %%%%%
[yr,yc] = size(Y);
if nargin < 2, 
	W = []; 
end; 
if ~isempty(W) && (yr ~= numel(W)),
	error('number of rows of Y does not match number of elements in W');
end;

%%%%% identify all possible X's and generate overall Histogram %%%%%
[sY, idx] = sort(Y(:),1);
[tmp,idx1] = sort(idx);        % generate inverse index

ix  = diff(sY, [], 1) > 0;
tmp = [find(ix); sum(~isnan(sY))];

R.datatype = 'HISTOGRAM';
R.X = sY(tmp);
R.N = sum(~isnan(Y), 1);

% generate inverse index
if nargout>1,
        tix = cumsum([1; ix]);	% rank 
        tix = reshape(tix(idx1), yr, yc);		% inverse sort rank
        cc  = 1;
        tmp = sum(ix) + 1;
	if exist('OCTAVE_VERSION') >= 5,
		; % NOP; no support for integer datatyp 
        elseif tmp <= 2^8;
                tix = uint8(tix);
                cc = 8/1;
        elseif tmp <= 2^16;
                tix = uint16(tix);
                cc = 8/2;
        elseif tmp <= 2^32;
                tix = uint32(tix);
                cc = 8/4;
        end;
        R.compressionratio = (prod(size(R.X)) + (yr*yc)/cc) / (yr*yc);
	R.tix = tix;        
end;


if yc==1, 
	if isempty(W)
		R.H = [tmp(1); diff(tmp)];
	else
		C = cumsum(W(idx));  	% cumulative weights  
		R.H = [C(tmp(1)); diff(C(tmp))];
	end;
	return;

elseif yc>1,
        % allocate memory
        H = zeros(size(R.X,1),yc);
        
        % scan each channel
        for k = 1:yc,
		if isempty(W)
			sY = sort(Y(:,k));
		else
			[sY,ix] = sort(Y(:,k));
			C = cumsum(W(ix));
		end
		ix = find(diff(sY,[],1) > 0);
                if size(ix,1) > 0,
                        tmp = [ix; R.N(k)];
                else
                        tmp = R.N(k);
                end;

                t = 0;
                j = 1;
		if isempty(W)
                    for x = tmp',
                        acc = sY(x);
                        while R.X(j)~=acc, j=j+1; end;
                        %j = find(sY(x)==R.X);   % identify position on X 
                        H(j,k) = H(j,k) + (x-t);  % add diff(tmp)
                        t = x;
                    end;
		else
                    for x = tmp',
                        acc = sY(x);
                        while R.X(j)~=acc, j=j+1; end;
                        %j = find(sY(x)==R.X);   % identify position on X 
                        H(j,k) = H(j,k) + C(x)-t;  % add diff(tmp)
                        t = C(x);
                    end;
		end; 
        end;
        
	R.H = H;
end;