/usr/lib/python2.7/dist-packages/Scientific/Mathematica.py is in python-scientific 2.9.4-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 | # Interface to Mathematica for plotting
#
# Written by Konrad Hinsen <hinsen@cnrs-orleans.fr>
# last revision: 2006-11-23
#
# Note: I haven't bee using this for ages. Perhaps it doesn't work with
# current Mathematica versions any more.
#
import Scientific.N as Numeric
import os, string, tempfile
# Class representing a Mathematica process
class Mathematica:
def __init__(self, progname = 'math'):
self.progname = progname
self.script = ''
self.font = "Courier"
self.textsize = 10
def clear(self):
self.script = ''
def execute(self):
scriptfile = tempfile.mktemp()
file = open(scriptfile, 'w')
file.write(self.script)
file.write('Quit\n')
file.close()
#os.system('cat ' + scriptfile)
#commandline = self.progname + (' -run \'<<"%s"\'' % scriptfile)
commandline = self.progname + ' < ' + scriptfile + ' >/dev/null 2>&1'
os.system(commandline)
os.unlink(scriptfile)
def command(self, command):
self.script = self.script + command
def backup(self, n):
self.script = self.script[:-n]
def defineVariable(self, name, array):
self.command(name + ' = ')
self.command(formatValue(array))
self.command('\n')
def setFont(self, font, size):
self.font = font
self.textsize = size
def displayOptions(self):
s = 'DefaultFont->{"' + self.font + '",' + \
formatValue(self.textsize) + '}'
return s
def plot(self, data, display = 1):
s = 'graph = Show['
i = 0
for dataset in data:
s = s + 'ListPlot[' + formatValue(dataset) + \
', PlotJoined->True, DisplayFunction->Identity, ' + \
'PlotRange->All, PlotStyle->' + self.dash[i] + ', ' + \
self.displayOptions() + '], '
i = (i + 1) % len(self.dash)
if display:
s = s + 'DisplayFunction->$DisplayFunction]\n'
else:
s = s + 'DisplayFunction->Identity]\n'
self.command(s)
dash = ['Dashing[{0.1,0.0}]', 'Dashing[{0.03, 0.015}]',
'Dashing[{0.03, 0.03}]', 'Dashing[{0.015, 0.015}]',
'Dashing[{0.03, 0.015, 0.015, 0.015}]',
'Dashing[{0.015, 0.015}]', 'Dashing[{0.015, 0.03}]']
def contourPlot(self, xaxis, yaxis, data, contours=None, display=1):
s = 'graph = Show[ContourGraphics[' \
+ formatValue(Numeric.transpose(data)) \
+ ', MeshRange->' \
+ formatValue([[xaxis[0], xaxis[-1]], [yaxis[0], yaxis[-1]]]) \
+ ', ContourShading->False'
if contours is not None:
s = s + ', Contours->' + formatValue(contours)
s = s + ', ' + self.displayOptions() + '],'
if display:
s = s + 'DisplayFunction->$DisplayFunction]\n'
else:
s = s + 'DisplayFunction->Identity]\n'
self.command(s)
def surfacePlot(self, xaxis, yaxis, data, display=1):
s = 'graph = Show[ListPlot3D[' \
+ formatValue(Numeric.transpose(data)) \
+ ', MeshRange->' \
+ formatValue([[xaxis[0], xaxis[-1]], [yaxis[0], yaxis[-1]]])
s = s + ', ' + self.displayOptions() + '],'
if display:
s = s + 'DisplayFunction->$DisplayFunction]\n'
else:
s = s + 'DisplayFunction->Identity]\n'
self.command(s)
def printGraph(self, filename):
self.command('Display["' + filename + '", graph, "EPS"]\n')
# Format scalars, arrays, and nested lists for Mathematica
def formatValue(x):
is_sequence = 1
try:
x[0]
except:
is_sequence = 0
if is_sequence:
s = '{'
for e in x:
s = s + formatValue(e) + ', '
s = s[:-2] + '}'
else:
if type(x) == type(''):
s = '"' + x + '"'
elif type(x) == type(0):
s = `x`
elif type(x) == type(0.):
s = string.replace(`x`, 'e','*10^')
elif type(x) == type(0.j):
s = '(' + string.replace(`x.real`, 'e','*10^') + \
'+' + string.replace(`x.imag`, 'e','*10^') + 'I)'
else:
raise TypeError('Unknown type ' + `type(x)`)
return s
# Simple plot functions
def _output(m, options):
if options.has_key('file'):
m.printGraph(options['file'])
m.execute()
else:
filename = tempfile.mktemp('.eps')
m.printGraph(filename)
m.execute()
if os.fork() == 0:
commandline = 'gv ' + filename + ' >/dev/null 2>&1'
os.system(commandline)
os.unlink(filename)
os._exit(0)
def plot(*data, **options):
m = Mathematica()
m.plot(data, display=0)
_output(m, options)
def contourPlot(xaxis, yaxis, data, contours=None, **options):
m = Mathematica()
m.contourPlot(xaxis, yaxis, data, contours, display=0)
_output(m, options)
def surfacePlot(xaxis, yaxis, data, **options):
m = Mathematica()
m.surfacePlot(xaxis, yaxis, data, display=0)
_output(m, options)
def multiplePlots(data, **options):
m = Mathematica()
i = 0
lines = []
for line in data:
columns = []
for item in line:
if type(item) != type(()): item = (item, )
name = 'plot'+`i`
m.command(name + ' = ')
m.plot(item, 0)
columns.append(name)
i = i + 1
lines.append(columns)
m.command('\ngraph = Show[GraphicsArray[{')
for line in lines:
m.command('{')
for item in line:
m.command(item + ', ')
m.backup(2)
m.command('}, ')
m.backup(2)
m.command('}], Displayfunction->$DisplayFunction]\n')
if options.has_key('file'):
m.printGraph(options['file'])
m.execute()
# These examples are all the documentation you will get!
if __name__ == '__main__':
from Scientific.N import arange, sin, NewAxis
# data1 = [4,6,5,3]
# data2 = [4,6,5,3]
# multiplePlots([[data1], [data2]])
# plot([4,6,5,3], file = 'junk.ps')
# plot([(3,6.8),(4,4.2),(5,0.5)], [4,6,5,3])
x = arange(10)
y = arange(15)
data = x[:, NewAxis]*sin(y/2.)
#contourPlot(x, y, data, arange(0.,10.,0.1))
surfacePlot(x, y, data)
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