/usr/lib/R/site-library/GenABEL/help/AnIndex is in r-cran-genabel 1.7-6-1.
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add.phdata add.phdata
add.plot add.plot
annotation snp.data-class
annotation,gwaa.data-method snp.data-class
annotation,scan.gwaa-method scan.gwaa-class
annotation,snp.data-method snp.data-class
arrange_probabel_phe arrange_probabel_phe
as.character.gwaa.data as.character.gwaa.data
as.character.snp.coding as.character.snp.coding
as.character.snp.data as.character.snp.data
as.character.snp.strand as.character.snp.strand
as.data.frame.gwaa.data as.data.frame.gwaa.data
as.double.gwaa.data as.double.gwaa.data
as.double.snp.data as.double.snp.data
as.genotype as.genotype
as.genotype.gwaa.data as.genotype.gwaa.data
as.genotype.snp.data as.genotype.snp.data
as.hsgeno as.hsgeno
as.hsgeno.gwaa.data as.hsgeno.gwaa.data
as.hsgeno.snp.data as.hsgeno.snp.data
autosomal autosomal
blurGenotype blurGenotype
catable catable
ccfast ccfast
check.marker check.marker
check.marker-class check.marker-class
check.trait check.trait
checkPackageVersionOnCRAN checkPackageVersionOnCRAN
chi2_CG cocohet
chromosome snp.data-class
chromosome,gwaa.data-method snp.data-class
chromosome,scan.gwaa-method scan.gwaa-class
chromosome,snp.data-method snp.data-class
cocohet cocohet
coding snp.data-class
coding,gwaa.data-method snp.data-class
coding,scan.gwaa-method scan.gwaa-class
coding,snp.data-method snp.data-class
coding<- snp.data-class
coding<-,gwaa.data-method snp.data-class
coding<-,snp.data-method snp.data-class
coerce,snp.coding,character-method snp.coding-class
coerce,snp.data,character-method snp.data-class
coerce,snp.data,genotype-method snp.data-class
coerce,snp.data,hsgeno-method snp.data-class
coerce,snp.data,numeric-method snp.data-class
coerce,snp.mx,character-method snp.mx-class
coerce,snp.mx,numeric-method snp.mx-class
coerce,snp.strand,character-method snp.strand-class
convert.snp.affymetrix convert.snp.affymetrix
convert.snp.illumina convert.snp.illumina
convert.snp.mach convert.snp.mach
convert.snp.ped convert.snp.ped
convert.snp.text convert.snp.text
convert.snp.tped convert.snp.tped
crnames crnames
del.phdata del.phdata
descriptives.marker descriptives.marker
descriptives.scan descriptives.scan
descriptives.trait descriptives.trait
dim,scan.gwaa-method scan.gwaa-class
dim,snp.data-method snp.data-class
dimnames,scan.gwaa-method scan.gwaa-class
dimnames,snp.data-method snp.data-class
dprfast dprfast
effallele snp.data-class
effallele,gwaa.data-method snp.data-class
effallele,scan.gwaa-method scan.gwaa-class
effallele,snp.data-method snp.data-class
egscore egscore
egscore.old egscore.old
emp.ccfast emp.ccfast
emp.qtscore emp.qtscore
estlambda estlambda
export.impute export.impute
export.merlin export.merlin
export.plink export.plink
extract.annotation.impute extract.annotation.impute
extract.annotation.mach extract.annotation.mach
findRelatives findRelatives
formetascore formetascore
GASurv GASurv
GC GC
GC_ovdom GC_ovdom
ge03d2 ge03d2
ge03d2.clean ge03d2
ge03d2c ge03d2
ge03d2ex ge03d2
ge03d2ex.clean ge03d2
GenABEL GenABEL
genabel GenABEL
generateOffspring generateOffspring
getcall scan.gwaa-class
getcall,scan.gwaa-method scan.gwaa-class
getfamily scan.gwaa-class
getfamily,scan.gwaa-method scan.gwaa-class
getLogLikelihoodGivenRelation getLogLikelihoodGivenRelation
grammar grammar
gtdata gwaa.data-class
gtdata,gwaa.data-method gwaa.data-class
gwaa.data-class gwaa.data-class
hom hom
hom.old hom.old
HWE.show HWE.show
ibs ibs
ibs.old ibs.old
idnames snp.data-class
idnames,gwaa.data-method snp.data-class
idnames,scan.gwaa-method scan.gwaa-class
idnames,snp.data-method snp.data-class
impute2databel impute2databel
impute2mach impute2mach
lambda scan.gwaa-class
lambda,scan.gwaa-method scan.gwaa-class
load.gwaa.data load.gwaa.data
mach2databel mach2databel
makeTransitionMatrix makeTransitionMatrix
male snp.data-class
male,gwaa.data-method snp.data-class
male,scan.gwaa-method scan.gwaa-class
male,snp.data-method snp.data-class
map snp.data-class
map,gwaa.data-method snp.data-class
map,scan.gwaa-method scan.gwaa-class
map,snp.data-method snp.data-class
merge.gwaa.data merge.gwaa.data
merge.snp.data merge.snp.data
mlreg mlreg
mlreg.p mlreg.p
mmscore mmscore
nids snp.data-class
nids,gwaa.data-method snp.data-class
nids,scan.gwaa-method scan.gwaa-class
nids,snp.data-method snp.data-class
npsubtreated npsubtreated
nsnps snp.data-class
nsnps,gwaa.data-method snp.data-class
nsnps,scan.gwaa-method scan.gwaa-class
nsnps,snp.data-method snp.data-class
patch_strand patch_strand
perid.summary perid.summary
PGC PGC
phdata gwaa.data-class
phdata,gwaa.data-method gwaa.data-class
phdata<- gwaa.data-class
phdata<-,gwaa.data-method gwaa.data-class
plot, check.marker-method check.marker-class
plot, scan.gwaa.2D-method scan.gwaa.2D-class
plot,scan.gwaa-method scan.gwaa-class
plot.check.marker plot.check.marker
plot.scan.gwaa plot.scan.gwaa
plot.scan.gwaa.2D plot.scan.gwaa.2D
polygenic polygenic
polygenic_hglm polygenic_hglm
pop2.ids ge03d2
qc.nostr ge03d2
qc.str ge03d2
qtscore qtscore
qvaluebh95 qvaluebh95
r2fast r2fast
r2fast.old r2fast.old
recodeChromosome recodeChromosome
reconstructNPs reconstructNPs
redundant redundant
refallele snp.data-class
refallele,gwaa.data-method snp.data-class
refallele,scan.gwaa-method scan.gwaa-class
refallele,snp.data-method snp.data-class
refresh.gwaa.data refresh.gwaa.data
reg.gwaa mlreg
results scan.gwaa-class
results,scan.gwaa-method scan.gwaa-class
rhofast rhofast
rntransform rntransform
save.gwaa.data save.gwaa.data
scan.glm scan.glm
scan.glm.2D scan.glm.2D
scan.gwaa-class scan.gwaa-class
scan.gwaa.2D-class scan.gwaa.2D-class
scan.haplo scan.haplo
scan.haplo.2D scan.haplo.2D
show,gwaa.data-method gwaa.data-class
show,scan.gwaa-method scan.gwaa-class
show,snp.coding-method snp.coding-class
show,snp.data-method snp.data-class
show,snp.mx-method snp.mx-class
show,snp.strand-method snp.strand-class
show.ncbi show.ncbi
snp.coding-class snp.coding-class
snp.data snp.data
snp.data-class snp.data-class
snp.mx-class snp.mx-class
snp.names snp.names
snp.strand-class snp.strand-class
snp.subset snp.subset
snpnames snp.data-class
snpnames,gwaa.data-method snp.data-class
snpnames,scan.gwaa-method scan.gwaa-class
snpnames,snp.data-method snp.data-class
snps.cell-class snps.cell-class
sortmap.internal sortmap.internal
srdta srdta
sset sset
strand snp.data-class
strand,gwaa.data-method snp.data-class
strand,scan.gwaa-method scan.gwaa-class
strand,snp.data-method snp.data-class
strand<- snp.data-class
strand<-,gwaa.data-method snp.data-class
strand<-,snp.data-method snp.data-class
summary, check.marker-method check.marker-class
summary,gwaa.data-method gwaa.data-class
summary,snp.data-method snp.data-class
summary,snp.mx-method snp.mx-class
summary.check.marker summary.check.marker
summary.gwaa.data summary.gwaa.data
summary.scan.gwaa summary.scan.gwaa
summary.snp.data summary.snp.data
summary.snp.data_old summary.snp.data
Xfix Xfix
ztransform ztransform
[,gwaa.data,ANY,ANY,ANY-method gwaa.data-class
[,scan.gwaa,ANY,ANY,ANY-method scan.gwaa-class
[,snp.coding,ANY,missing,missing-method snp.coding-class
[,snp.data,ANY,ANY,ANY-method snp.data-class
[,snp.mx,ANY,ANY,ANY-method snp.mx-class
[,snp.strand,ANY,missing,missing-method snp.strand-class
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