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<html><head><title>RUNIT TEST PROTOCOL--Wed Jan 9 20:36:47 2013</title>
</head>
<body><h1 TRUE>RUNIT TEST PROTOCOL--Wed Jan 9 20:36:47 2013</h1>
<p>Number of test functions: 18</p>
<p style=color:red>Number of errors: 1</p>
<p>Number of failures: 0</p>
<hr>
<h3 TRUE>1 Test suite</h3>
<table border="1" width="60%" >
<tr><th width="30%">Name</th>
<th width="30%">Test functions</th>
<th width="20%">Errors</th>
<th width="20%">Failures</th>
</tr>
<tr><td><a href="#GenABEL unit testing">GenABEL unit testing</a></td>
<td>18</td>
<td bgcolor="red">1</td>
<td>0</td>
</tr>
</table>
<hr>
<h3 TRUE>Errors</h3>
<table border="1" width="100%" >
<tr><th width="30%">Test suite : test function</th>
<th width="70%">message</th>
</tr>
<tr><td><a href="#GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.impute2xxx.R_test.impute2databel">GenABEL unit testing : test.impute2databel</a></td>
<td>Error in .Call("iterator", tmp_fv@data, as.integer(0), as.integer(0), :
"iterator" not resolved from current namespace (GenABEL)
</td>
</tr>
</table>
<hr>
<h3 TRUE>Details</h3>
<p><a name="GenABEL unit testing"><h5 TRUE>Test Suite: GenABEL unit testing</h5>
</a>Test function regexp: ^test.+<br/>Test file regexp: ^runit.+\.[rR]$<br/>Involved directory:<br/>/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests<br/><ul><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.convert.snp.R">Test file: runit.convert.snp.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.convert.snp.R_test.convert.snp">test.convert.snp: (4 checks) ... OK (1.02 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.convert.snp.ped.R">Test file: runit.convert.snp.ped.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.convert.snp.ped.R_test.convert.snp.ped">test.convert.snp.ped: (0 checks) ... OK (0.03 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.descriptives.trait.R">Test file: runit.descriptives.trait.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.descriptives.trait.R_test.descriptives.trait">test.descriptives.trait: (1 checks) ... OK (0.43 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.exports.R">Test file: runit.exports.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.exports.R_test.exports">test.exports: (15 checks) ... OK (0.5 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.findRelatives.R">Test file: runit.findRelatives.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.findRelatives.R_test.findRelatives">test.findRelatives: (10 checks) ... OK (46.07 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.impute2xxx.R">Test file: runit.impute2xxx.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.impute2xxx.R_test.impute2databel"><u style=color:red>test.impute2databel: ERROR !! </u></a>Error in .Call("iterator", tmp_fv@data, as.integer(0), as.integer(0), :
"iterator" not resolved from current namespace (GenABEL)
<br/></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.impute2xxx_large.R">Test file: runit.impute2xxx_large.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.impute2xxx_large.R_test.impute2xxx_large">test.impute2xxx_large: (0 checks) ... OK (0 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.iterator.R">Test file: runit.iterator.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.iterator.R_test.summary_snp_data">test.summary_snp_data: (3 checks) ... OK (3.68 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.mach2databel.R">Test file: runit.mach2databel.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.mach2databel.R_test.mach2databel">test.mach2databel: (8 checks) ... OK (0.17 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.merge.R">Test file: runit.merge.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.merge.R_test.merge.bug1641">test.merge.bug1641: (0 checks) ... OK (0.13 seconds)<br/></a></li><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.merge.R_test.merge.bug1676">test.merge.bug1676: (2 checks) ... OK (0.12 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.mmscore.R">Test file: runit.mmscore.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.mmscore.R_test.exports">test.exports: (1 checks) ... OK (0.73 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.polygenic.R">Test file: runit.polygenic.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.polygenic.R_test.polygenic.Bug1322">test.polygenic.Bug1322: (2 checks) ... OK (1.27 seconds)<br/></a></li><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.polygenic.R_test.polygenic.eigenOfRel">test.polygenic.eigenOfRel: (1 checks) ... OK (1.51 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.polylik.R">Test file: runit.polylik.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.polylik.R_test.polylik">test.polylik: (6 checks) ... OK (7.69 seconds)<br/></a></li></ul></li></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.recodeChromosome.R">Test file: runit.recodeChromosome.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.recodeChromosome.R_test.recodeChromosome">test.recodeChromosome: (8 checks) ... OK (0.12 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.sortmap.internal.R">Test file: runit.sortmap.internal.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.sortmap.internal.R_test.sortmap.internal.bug1673">test.sortmap.internal.bug1673: (1 checks) ... OK (0 seconds)<br/></a></li></ul></li><li><a href="/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.strandModify.R">Test file: runit.strandModify.R</a><ul><li><a name="GenABEL unit testing__Users_yuryaulchenko_eclipse_workspace_genabel_pkg_GenABEL_tests_.._inst_unitTests_runit.strandModify.R_test.strandModify">test.strandModify: (2 checks) ... OK (0.05 seconds)<br/></a></li></ul></li></ul><hr>
<table border="0" width="80%" >
<tr><th>Name</th>
<th>Value</th>
</tr>
<tr><td>platform</td>
<td>x86_64-apple-darwin9.8.0</td>
</tr>
<tr><td>arch</td>
<td>x86_64</td>
</tr>
<tr><td>os</td>
<td>darwin9.8.0</td>
</tr>
<tr><td>system</td>
<td>x86_64, darwin9.8.0</td>
</tr>
<tr><td>status</td>
<td>Under development (unstable)</td>
</tr>
<tr><td>major</td>
<td>3</td>
</tr>
<tr><td>minor</td>
<td>0.0</td>
</tr>
<tr><td>year</td>
<td>2013</td>
</tr>
<tr><td>month</td>
<td>01</td>
</tr>
<tr><td>day</td>
<td>08</td>
</tr>
<tr><td>svn rev</td>
<td>61589</td>
</tr>
<tr><td>language</td>
<td>R</td>
</tr>
<tr><td>version.string</td>
<td>R Under development (unstable) (2013-01-08 r61589)</td>
</tr>
<tr><td>nickname</td>
<td>Unsuffered Consequences</td>
</tr>
<tr><td>host</td>
<td>YAMacBookPro.local</td>
</tr>
<tr><td>compiler</td>
<td>NA</td>
</tr>
</table>
</body>
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