/usr/lib/R/site-library/GenABEL/unitTests/report.txt is in r-cran-genabel 1.7-6-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 | RUNIT TEST PROTOCOL -- Wed Jan 9 20:36:47 2013
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Number of test functions: 18
Number of errors: 1
Number of failures: 0
1 Test Suite :
GenABEL unit testing - 18 test functions, 1 error, 0 failures
ERROR in test.impute2databel: Error in .Call("iterator", tmp_fv@data, as.integer(0), as.integer(0), :
"iterator" not resolved from current namespace (GenABEL)
Details
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Test Suite: GenABEL unit testing
Test function regexp: ^test.+
Test file regexp: ^runit.+\.[rR]$
Involved directory:
/Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests
---------------------------
Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.convert.snp.R
test.convert.snp: (4 checks) ... OK (1.02 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.convert.snp.ped.R
test.convert.snp.ped: (0 checks) ... OK (0.03 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.descriptives.trait.R
test.descriptives.trait: (1 checks) ... OK (0.43 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.exports.R
test.exports: (15 checks) ... OK (0.5 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.findRelatives.R
test.findRelatives: (10 checks) ... OK (46.07 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.impute2xxx.R
test.impute2databel: ERROR !!
Error in .Call("iterator", tmp_fv@data, as.integer(0), as.integer(0), :
"iterator" not resolved from current namespace (GenABEL)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.impute2xxx_large.R
test.impute2xxx_large: (0 checks) ... OK (0 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.iterator.R
test.summary_snp_data: (3 checks) ... OK (3.68 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.mach2databel.R
test.mach2databel: (8 checks) ... OK (0.17 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.merge.R
test.merge.bug1641: (0 checks) ... OK (0.13 seconds)
test.merge.bug1676: (2 checks) ... OK (0.12 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.mmscore.R
test.exports: (1 checks) ... OK (0.73 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.polygenic.R
test.polygenic.Bug1322: (2 checks) ... OK (1.27 seconds)
test.polygenic.eigenOfRel: (1 checks) ... OK (1.51 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.polylik.R
test.polylik: (6 checks) ... OK (7.69 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.recodeChromosome.R
test.recodeChromosome: (8 checks) ... OK (0.12 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.sortmap.internal.R
test.sortmap.internal.bug1673: (1 checks) ... OK (0 seconds)
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Test file: /Users/yuryaulchenko/eclipse_workspace/genabel/pkg/GenABEL/tests/../inst/unitTests/runit.strandModify.R
test.strandModify: (2 checks) ... OK (0.05 seconds)
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