/usr/lib/R/site-library/GenABEL/unitTests/runit.convert.snp.ped.R is in r-cran-genabel 1.7-6-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | ### --- Test setup ---
#
# regression test
#
if(FALSE) {
## Not really needed, but can be handy when writing tests
library(RUnit)
library(GenABEL)
}
### do not run
#stop("SKIP THIS TEST")
###
### ---- common functions and data -----
#source(paste("../inst/unitTests/shared_functions.R"))
#source(paste(path,"/shared_functions.R",sep=""))
### --- Test functions ---
test.convert.snp.ped <- function()
{
pref <- ""
pedf <- paste(pref,"pedin.18",sep="")
mapf <- paste(pref,"map.18",sep="")
convert.snp.ped(pedfile=pedf,mapfile=mapf,out="tmp.raw")
unlink("tmp.raw")
}
|