/usr/lib/R/site-library/GenABEL/unitTests/runit.merge.R is in r-cran-genabel 1.7-6-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 | ### --- Test setup ---
#
# regression test
#
if(FALSE) {
## Not really needed, but can be handy when writing tests
library(RUnit)
library(GenABEL)
}
### do not run
#stop("SKIP THIS TEST")
###
### ---- common functions and data -----
#source(paste("../inst/unitTests/shared_functions.R"))
#source(paste(path,"/shared_functions.R",sep=""))
### --- Test functions ---
test.merge.bug1641 <- function()
{
data(srdta)
x1 <- srdta[1:4,1]
x2 <- srdta[5:10, 2]
xy <- merge(x1, x2, intersected_snps_only=FALSE)
}
test.merge.bug1676 <- function()
{
data(srdta)
x1 <- srdta[1:4,1]
x2 <- srdta[5:10, 2]
xy <- merge(x1,x2)
phdata(x1)
phdata(x2)
phdata(xy)
checkIdentical(phdata(xy)[1:dim(phdata(x1))[1],],phdata(x1))
checkIdentical(phdata(xy)[(dim(phdata(x1))[1]+1):(dim(phdata(x1))[1]+dim(phdata(x2))[1]),],phdata(x2))
}
|