/usr/lib/R/site-library/GenABEL/unitTests/runit.mmscore.R is in r-cran-genabel 1.7-6-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 | ### --- Test setup ---
#
# regression tests
#
if(FALSE) {
## Not really needed, but can be handy when writing tests
library(RUnit)
library(GenABEL)
}
### do not run
#stop("SKIP THIS TEST")
###
### ---- common functions and data -----
#source(paste("../inst/unitTests/shared_functions.R"))
#source(paste(path,"/shared_functions.R",sep=""))
### --- Test functions ---
test.exports <- function()
{
data(ge03d2.clean)
dta <- ge03d2.clean[1:200,autosomal(ge03d2.clean)[1:3000]]
gkin <- ibs(dta[,1:2000],w="freq")
h2 <- polygenic(height,data=dta,kin=gkin)
xOld <- mmscore(h2,dta,cppFun="old")
xNew <- mmscore(h2,dta,cppFun="new")
checkEquals(results(xNew),results(xOld))
}
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