/usr/lib/R/site-library/GenABEL/unitTests/runit.sortmap.internal.R is in r-cran-genabel 1.7-6-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | ### --- Test setup ---
#
# regression test
#
if(FALSE) {
## Not really needed, but can be handy when writing tests
library(RUnit)
library(GenABEL)
}
### do not run
#stop("SKIP THIS TEST")
###
### ---- common functions and data -----
#source(paste("../inst/unitTests/shared_functions.R"))
#source(paste(path,"/shared_functions.R",sep=""))
### --- Test functions ---
test.sortmap.internal.bug1673 <- function()
{
nmrkInChr <- c(7,5,3)
chrLevels <- c("cH1","X","Y")
chroms <- mappos <- rep(NA,sum(nmrkInChr))
k <- 1
for (i in 1:length(nmrkInChr)) {
for (j in seq(nmrkInChr[i],1,-1)) {
chroms[k] <- chrLevels[i]
mappos[k] <- j
k <- k + 1
}
}
a <- sortmap.internal(chroms,mappos)
checkTrue( all(is.finite(a$chnum)) )
}
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