/usr/lib/R/site-library/GenABEL/unitTests/runit.strandModify.R is in r-cran-genabel 1.7-6-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 | ### --- Test setup ---
#
# regression test
#
if(FALSE) {
## Not really needed, but can be handy when writing tests
library(RUnit)
library(GenABEL)
}
### do not run
#stop("SKIP THIS TEST")
###
### ---- common functions and data -----
#source(paste("../inst/unitTests/shared_functions.R"))
#source(paste(path,"/shared_functions.R",sep=""))
### --- Test functions ---
test.strandModify <- function()
{
data(ge03d2ex)
str <- strand(ge03d2ex)
dta1 <- ge03d2ex
uStrand <- rep("u",nsnps(dta1))
strand(dta1) <- uStrand
dta2 <- patch_strand(data=dta1,snpid=snpnames(dta1),strand=uStrand)
table(strand(dta1),strand(ge03d2ex))
table(strand(dta2),strand(ge03d2ex))
strand(dta1) <- str
dta2 <- patch_strand(data=dta2,snpid=snpnames(dta2),strand=str)
checkIdentical(dta1,ge03d2ex)
checkIdentical(dta2,ge03d2ex)
table(strand(dta1),strand(ge03d2ex))
table(strand(dta2),strand(ge03d2ex))
}
|