About

This package is 44.6 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/f/fastaq/fastaq_3.11.1-2_all.deb .

View its full control file here: debian/control.

Description

FASTA and FASTQ file manipulation tools

Relations

This package depends on: python3:any (>= 3.3.2-2~), samtools.

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

fastaq 3.11.1-2 is in ubuntu - xenial / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 163 bytes
prerm text/x-shellscript N/A N/A 385 bytes
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/fastaq text/x-python root:root 0o755 3.9 KB
/usr/lib/ root:root 0o755
/usr/lib/python3/ root:root 0o755
/usr/lib/python3/dist-packages/ root:root 0o755
/usr/lib/python3/dist-packages/pyfastaq/ root:root 0o755
/usr/lib/python3/dist-packages/pyfastaq-3.11.1.egg-info/ root:root 0o755
/usr/lib/python3/dist-packages/pyfastaq-3.11.1.egg-info/dependency_links.txt application/octet-stream root:root 0o644 1 byte
/usr/lib/python3/dist-packages/pyfastaq-3.11.1.egg-info/PKG-INFO text/plain root:root 0o644 529 bytes
/usr/lib/python3/dist-packages/pyfastaq-3.11.1.egg-info/top_level.txt text/plain root:root 0o644 9 bytes
/usr/lib/python3/dist-packages/pyfastaq/caf.py text/x-c++ root:root 0o644 2.0 KB
/usr/lib/python3/dist-packages/pyfastaq/common.py text/plain root:root 0o644 19 bytes
/usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py text/plain root:root 0o644 2.5 KB
/usr/lib/python3/dist-packages/pyfastaq/__init__.py text/x-python root:root 0o644 157 bytes
/usr/lib/python3/dist-packages/pyfastaq/intervals.py text/x-c++ root:root 0o644 3.7 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/ root:root 0o755
/usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py text/x-python root:root 0o644 4.1 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py text/x-python root:root 0o644 894 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py text/x-python root:root 0o644 714 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/chunker.py text/x-python root:root 0o644 1.5 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/count_sequences.py text/x-python root:root 0o644 379 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/deinterleave.py text/x-python root:root 0o644 831 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/enumerate_names.py text/x-python root:root 0o644 1.1 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/expand_nucleotides.py text/x-python root:root 0o644 609 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/fasta_to_fastq.py text/x-python root:root 0o644 587 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/filter.py text/x-python root:root 0o644 2.0 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/get_ids.py text/x-python root:root 0o644 433 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py text/x-python root:root 0o644 733 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py application/x-empty root:root 0o644 0 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/interleave.py text/x-python root:root 0o644 871 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/make_random_contigs.py text/x-python root:root 0o644 1.3 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/merge.py text/x-python root:root 0o644 581 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/replace_bases.py text/x-python root:root 0o644 574 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/reverse_complement.py text/x-python root:root 0o644 423 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py text/x-python root:root 0o644 704 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/search_for_seq.py text/x-python root:root 0o644 757 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/sequence_trim.py text/x-python root:root 0o644 1.5 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_size.py text/x-python root:root 0o644 618 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/split_by_base_count.py text/x-python root:root 0o644 939 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/strip_illumina_suffix.py text/x-python root:root 0o644 429 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/to_boulderio.py text/x-python root:root 0o644 483 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/to_fake_qual.py text/x-python root:root 0o644 596 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/to_fasta.py text/x-python root:root 0o644 1.1 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/to_mira_xml.py text/x-python root:root 0o644 428 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/to_orfs_gff.py text/x-python root:root 0o644 651 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/to_perfect_reads.py text/x-python root:root 0o644 4.1 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/to_random_subset.py text/x-python root:root 0o644 1.4 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/to_tiling_bam.py text/x-python root:root 0o644 3.1 KB
/usr/lib/python3/dist-packages/pyfastaq/runners/to_unique_by_id.py text/x-python root:root 0o644 593 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/translate.py text/x-python root:root 0o644 627 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/trim_contigs.py text/x-python root:root 0o644 766 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/trim_ends.py text/x-python root:root 0o644 648 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/trim_Ns_at_end.py text/x-python root:root 0o644 507 bytes
/usr/lib/python3/dist-packages/pyfastaq/runners/version.py text/x-python root:root 0o644 77 bytes
/usr/lib/python3/dist-packages/pyfastaq/sequences.py text/x-c++ root:root 0o644 21.7 KB
/usr/lib/python3/dist-packages/pyfastaq/tasks.py text/x-c++ root:root 0o644 27.6 KB
/usr/lib/python3/dist-packages/pyfastaq/utils.py text/x-c++ root:root 0o644 2.2 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/fastaq/ root:root 0o755
/usr/share/doc/fastaq/changelog.Debian.gz application/gzip root:root 0o644 516 bytes
/usr/share/doc/fastaq/copyright text/plain root:root 0o644 1.1 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/fastaq.1.gz application/gzip root:root 0o644 1.4 KB
/usr/share/man/man1/fastaq-add_indels.1.gz application/gzip root:root 0o644 654 bytes
/usr/share/man/man1/fastaq-caf_to_fastq.1.gz application/gzip root:root 0o644 461 bytes
/usr/share/man/man1/fastaq-capillary_to_pairs.1.gz application/gzip root:root 0o644 492 bytes
/usr/share/man/man1/fastaq-chunker.1.gz application/gzip root:root 0o644 582 bytes
/usr/share/man/man1/fastaq-count_sequences.1.gz application/gzip root:root 0o644 324 bytes
/usr/share/man/man1/fastaq-deinterleave.1.gz application/gzip root:root 0o644 464 bytes
/usr/share/man/man1/fastaq-enumerate_names.1.gz application/gzip root:root 0o644 517 bytes
/usr/share/man/man1/fastaq-expand_nucleotides.1.gz application/gzip root:root 0o644 425 bytes
/usr/share/man/man1/fastaq-fasta_to_fastq.1.gz application/gzip root:root 0o644 339 bytes
/usr/share/man/man1/fastaq-filter.1.gz application/gzip root:root 0o644 692 bytes
/usr/share/man/man1/fastaq-get_ids.1.gz application/gzip root:root 0o644 326 bytes
/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.gz application/gzip root:root 0o644 396 bytes
/usr/share/man/man1/fastaq-interleave.1.gz application/gzip root:root 0o644 437 bytes
/usr/share/man/man1/fastaq-make_random_contigs.1.gz application/gzip root:root 0o644 607 bytes
/usr/share/man/man1/fastaq-merge.1.gz application/gzip root:root 0o644 354 bytes
/usr/share/man/man1/fastaq-replace_bases.1.gz application/gzip root:root 0o644 367 bytes
/usr/share/man/man1/fastaq-reverse_complement.1.gz application/gzip root:root 0o644 326 bytes
/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.gz application/gzip root:root 0o644 422 bytes
/usr/share/man/man1/fastaq-search_for_seq.1.gz application/gzip root:root 0o644 478 bytes
/usr/share/man/man1/fastaq-sequence_trim.1.gz application/gzip root:root 0o644 614 bytes
/usr/share/man/man1/fastaq-sort_by_size.1.gz application/gzip root:root 0o644 381 bytes
/usr/share/man/man1/fastaq-split_by_base_count.1.gz application/gzip root:root 0o644 487 bytes
/usr/share/man/man1/fastaq-strip_illumina_suffix.1.gz application/gzip root:root 0o644 363 bytes
/usr/share/man/man1/fastaq-to_boulderio.1.gz application/gzip root:root 0o644 362 bytes
/usr/share/man/man1/fastaq-to_fake_qual.1.gz application/gzip root:root 0o644 361 bytes
/usr/share/man/man1/fastaq-to_fasta.1.gz application/gzip root:root 0o644 540 bytes
/usr/share/man/man1/fastaq-to_mira_xml.1.gz application/gzip root:root 0o644 349 bytes
/usr/share/man/man1/fastaq-to_orfs_gff.1.gz application/gzip root:root 0o644 395 bytes
/usr/share/man/man1/fastaq-to_perfect_reads.1.gz application/gzip root:root 0o644 665 bytes
/usr/share/man/man1/fastaq-to_random_subset.1.gz application/gzip root:root 0o644 492 bytes
/usr/share/man/man1/fastaq-to_tiling_bam.1.gz application/gzip root:root 0o644 597 bytes
/usr/share/man/man1/fastaq-to_unique_by_id.1.gz application/gzip root:root 0o644 426 bytes
/usr/share/man/man1/fastaq-translate.1.gz application/gzip root:root 0o644 391 bytes
/usr/share/man/man1/fastaq-trim_contigs.1.gz application/gzip root:root 0o644 467 bytes
/usr/share/man/man1/fastaq-trim_ends.1.gz application/gzip root:root 0o644 371 bytes
/usr/share/man/man1/fastaq-trim_Ns_at_end.1.gz application/gzip root:root 0o644 385 bytes
/usr/share/man/man1/fastaq-version.1.gz application/gzip root:root 0o644 197 bytes