/etc/getData.conf.d/RefSeq.getData is in getdata 0.2-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | # Proof-of-principle for RefSeq. Does not include everything.
print STDERR "Reading Canis lupus familiaris configuration file\n" if $verbose;
$toBeMirrored{"refseq.hsa"} = {
"name" => "The NCBI Reference Sequence project – Homo sapiens",
"tags" => ["human", "proteome", "transcriptome"],
"source" => "ln -s /etc/getData.conf.d/RefSeq.mk Makefile ; SPECIES=H_sapiens make get unpack",
"post-download" => "make emboss blast"
},
$toBeMirrored{"refseq.mmu"} = {
"name" => "The NCBI Reference Sequence project – Mus musculus",
"tags" => ["mouse", "proteome", "transcriptome"],
"source" => "ln -s /etc/getData.conf.d/RefSeq.mk Makefile ; SPECIES=M_musculus make get unpack",
"post-download" => "make emboss blast"
},
$toBeMirrored{"refseq.rno"} = {
"name" => "The NCBI Reference Sequence project – Rattus norvegicus",
"tags" => ["rat", "proteome", "transcriptome"],
"source" => "ln -s /etc/getData.conf.d/RefSeq.mk Makefile ; SPECIES=R_norvegicus make get unpack",
"post-download" => "make emboss blast"
},
1;
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