/usr/share/hyphy/TemplateBatchFiles/Phylohandbook.bf is in hyphy-common 2.2.6+dfsg-3build3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 | GetURL (thePage,"http://www.hyphy.org/phylohandbook/AnalysesIndex.bf");
ExecuteCommands (thePage);
|