/usr/share/hyphy/UserAddins/LRT is in hyphy-common 2.2.6+dfsg-3build3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 | fprintf (stdout, "Log-likelihood for the null model:");
fscanf (stdin, "Number", L_0);
fprintf (stdout, "Log-likelihood for the alternative model:");
fscanf (stdin, "Number", L_A);
fprintf (stdout, "Difference in degrees of freedom:");
fscanf (stdin, "Number", df);
fprintf (stdout, "\np=", 1-CChi2(2(L_A-L_0),df), "\n" );
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