/usr/share/perl5/Bio/Chado/Schema/Result/Sequence/FeatureSynonym.pm is in libbio-chado-schema-perl 0.20000-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 | package Bio::Chado::Schema::Result::Sequence::FeatureSynonym;
BEGIN {
$Bio::Chado::Schema::Result::Sequence::FeatureSynonym::AUTHORITY = 'cpan:RBUELS';
}
{
$Bio::Chado::Schema::Result::Sequence::FeatureSynonym::VERSION = '0.20000';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
=head1 NAME
Bio::Chado::Schema::Result::Sequence::FeatureSynonym - Linking table between feature and synonym.
=cut
__PACKAGE__->table("feature_synonym");
=head1 ACCESSORS
=head2 feature_synonym_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'feature_synonym_feature_synonym_id_seq'
=head2 synonym_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 feature_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
=head2 pub_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
The pub_id link is for relating the usage of a given synonym to the publication in which it was used.
=head2 is_current
data_type: 'boolean'
default_value: false
is_nullable: 0
The is_current boolean indicates whether the linked synonym is the current -official- symbol for the linked feature.
=head2 is_internal
data_type: 'boolean'
default_value: false
is_nullable: 0
Typically a synonym exists so that somebody querying the db with an obsolete name can find the object theyre looking for (under its current name. If the synonym has been used publicly and deliberately (e.g. in a paper), it may also be listed in reports as a synonym. If the synonym was not used deliberately (e.g. there was a typo which went public), then the is_internal boolean may be set to -true- so that it is known that the synonym is -internal- and should be queryable but should not be listed in reports as a valid synonym.
=cut
__PACKAGE__->add_columns(
"feature_synonym_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "feature_synonym_feature_synonym_id_seq",
},
"synonym_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"feature_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"pub_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"is_current",
{ data_type => "boolean", default_value => \"false", is_nullable => 0 },
"is_internal",
{ data_type => "boolean", default_value => \"false", is_nullable => 0 },
);
__PACKAGE__->set_primary_key("feature_synonym_id");
__PACKAGE__->add_unique_constraint("feature_synonym_c1", ["synonym_id", "feature_id", "pub_id"]);
=head1 RELATIONS
=head2 feature
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Sequence::Feature>
=cut
__PACKAGE__->belongs_to(
"feature",
"Bio::Chado::Schema::Result::Sequence::Feature",
{ feature_id => "feature_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 pub
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Pub::Pub>
=cut
__PACKAGE__->belongs_to(
"pub",
"Bio::Chado::Schema::Result::Pub::Pub",
{ pub_id => "pub_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
=head2 synonym
Type: belongs_to
Related object: L<Bio::Chado::Schema::Result::Sequence::Synonym>
=cut
__PACKAGE__->belongs_to(
"synonym",
"Bio::Chado::Schema::Result::Sequence::Synonym",
{ synonym_id => "synonym_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:1RaPS0gSnuoWDiQjnIwB/w
# You can replace this text with custom content, and it will be preserved on regeneration
1;
|