/usr/share/doc/libbiojava-java-demos/examples/seq/db/AddFilesToIndex.java is in libbiojava-java-demos 1:1.7.1-5.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 | /*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package seq.db;
import java.io.*;
import java.util.*;
import org.biojava.bio.*;
import org.biojava.bio.symbol.*;
import org.biojava.bio.seq.*;
import org.biojava.bio.seq.io.*;
import org.biojava.bio.seq.db.*;
/**
* This demo file is a simple implementation of pairwise-alignment.
*
* @author Matthew Pocock
*/
public class AddFilesToIndex {
public static void main(String[] args) {
try {
if(args.length == 0) {
throw new Exception("Use: indexName file1 file2 file...");
}
String indexName = args[0];
File indexFile = new File(indexName);
TabIndexStore tis = TabIndexStore.open(indexFile);
IndexedSequenceDB seqDB = new IndexedSequenceDB(tis);
for(int i = 1; i < args.length; i++) {
System.out.print("Adding: " + args[i] + "...");
seqDB.addFile(new File(args[i]));
System.out.println(" Done");
}
} catch (Throwable t) {
t.printStackTrace();
System.exit(1);
}
}
}
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