This file is indexed.

/usr/include/opengm/inference/external/qpbo.hxx is in libopengm-dev 2.3.6-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
#pragma once
#ifndef OPENGM_EXTERNAL_QPBO_HXX
#define OPENGM_EXTERNAL_QPBO_HXX

#include "opengm/graphicalmodel/graphicalmodel.hxx"
#include "opengm/inference/inference.hxx"
#include "opengm/inference/visitors/visitors.hxx"
//#include "opengm/inference/alphabetaswap.hxx"
//#include "opengm/inference/alphaexpansion.hxx"

#include "QPBO.h"

namespace opengm {
   namespace external {

      /// \brief QPBO Algorithm
      ///
      /// C. Rother, V. Kolmogorov, V. Lempitsky, and M. Szummer. "Optimizing binary MRFs via extended roof duality". CVPR 2007 
      ///
      /// \ingroup inference
      /// \ingroup external_inference
      template<class GM>
      class QPBO : public Inference<GM, opengm::Minimizer> {

      public:
         typedef GM GraphicalModelType;
         typedef opengm::Minimizer AccumulationType;
         OPENGM_GM_TYPE_TYPEDEFS;
         typedef visitors::VerboseVisitor<QPBO<GM> > VerboseVisitorType;
         typedef visitors::TimingVisitor<QPBO<GM> > TimingVisitorType;
         typedef visitors::EmptyVisitor<QPBO<GM> > EmptyVisitorType;
    
         ///TriBool
         enum TriBool {
            TB0, TB1, TBX
         };

         ///Parameter for opengm::external::QPBO
         struct Parameter {
            /// using probeing technique
            bool useProbeing_;
            /// forcing strong persistency
            bool strongPersistency_;
            /// using improving technique
            bool useImproveing_;
            /// initial configuration for improving
            std::vector<size_t> label_;
            /// \brief constructor

            Parameter() {
               strongPersistency_ = true;
               useImproveing_ = false;
               useProbeing_ = false;
            }
         };
         // construction
         QPBO(const GraphicalModelType& gm, const Parameter para = Parameter());
         ~QPBO();
         // query
         std::string name() const;
         const GraphicalModelType& graphicalModel() const;
         // inference
         InferenceTermination infer();
         template<class VisitorType>
         InferenceTermination infer(VisitorType&);
         InferenceTermination arg(std::vector<LabelType>&, const size_t& = 1) const;
         InferenceTermination arg(std::vector<TriBool>&, const size_t& = 1) const;
         virtual typename GM::ValueType bound() const;
         virtual typename GM::ValueType value() const; 
         double partialOptimality(std::vector<bool>&) const;

      private:
         const GraphicalModelType& gm_;
         Parameter parameter_;
         kolmogorov::qpbo::QPBO<ValueType>* qpbo_;
         ValueType constTerm_;
         ValueType bound_;
         
         int* label_;
         int* defaultLabel_;

      };
      // public interface
      /// \brief Construcor
      /// \param gm graphical model
      /// \param para belief propargation paramaeter

      template<class GM>
      QPBO<GM>
      ::QPBO(
         const typename QPBO::GraphicalModelType& gm,
         const Parameter para
         )
         : gm_(gm), bound_(-std::numeric_limits<ValueType>::infinity()) {
         parameter_ = para;
         label_ = new int[gm_.numberOfVariables()];
         defaultLabel_ = new int[gm_.numberOfVariables()];
         for(size_t i = 0; i < gm_.numberOfVariables(); ++i) {
            label_[i] = -1;
            defaultLabel_[i] = 0;
         }
         if(parameter_.label_.size() > 0) {
            for(size_t i = 0; i < parameter_.label_.size(); ++i) {
               defaultLabel_[i] = parameter_.label_[i];
            }
         }
         size_t numVariables = gm_.numberOfVariables();
         size_t numPairwiseFactors = 0;
         constTerm_ = 0;
         size_t vec0[] = {0};
         size_t vec1[] = {1};
         size_t vec00[] = {0, 0};
         size_t vec01[] = {0, 1};
         size_t vec10[] = {1, 0};
         size_t vec11[] = {1, 1};
         for(size_t j = 0; j < gm_.numberOfVariables(); ++j) {
            if(gm_.numberOfLabels(j) != 2) {
               throw RuntimeError("This implementation of QPBO supports only binary variables.");
            }
         }
         for(size_t j = 0; j < gm_.numberOfFactors(); ++j) {
            if(gm_[j].numberOfVariables() == 2) {
               ++numPairwiseFactors;
            }
            else if(gm_[j].numberOfVariables() > 2) {
               throw RuntimeError("This implementation of QPBO supports only factors of order <= 2.");
            }
         }
         qpbo_ = new kolmogorov::qpbo::QPBO<ValueType > (numVariables, numPairwiseFactors); // max number of nodes & edges
         qpbo_->AddNode(numVariables); // add two nodes
         for(size_t j = 0; j < gm_.numberOfFactors(); ++j) {
            if(gm_[j].numberOfVariables() == 0) {
               ; //constTerm_+= gm_[j](0);
            }
            else if(gm_[j].numberOfVariables() == 1) {
               qpbo_->AddUnaryTerm((int) (gm_[j].variableIndex(0)), gm_[j](vec0), gm_[j](vec1));
            }
            else if(gm_[j].numberOfVariables() == 2) {
               qpbo_->AddPairwiseTerm((int) (gm_[j].variableIndex(0)), (int) (gm_[j].variableIndex(1)),
                                      gm_[j](vec00), gm_[j](vec01), gm_[j](vec10), gm_[j](vec11));
            }
         }
         qpbo_->MergeParallelEdges();
      }

      template<class GM>
      QPBO<GM>
      ::~QPBO() {
         delete label_;
         delete defaultLabel_;
		 delete qpbo_;
      }

      template<class GM>
      inline std::string
      QPBO<GM>
      ::name() const {
         return "QPBO";
      }

      template<class GM>
      inline const typename QPBO<GM>::GraphicalModelType&
      QPBO<GM>
      ::graphicalModel() const {
         return gm_;
      }

      template<class GM>
      inline InferenceTermination
      QPBO<GM>
      ::infer() {
         EmptyVisitorType v;
         return infer(v);
      }

      template<class GM>
      template<class VisitorType>
      InferenceTermination 
      QPBO<GM>::infer(VisitorType& visitor)
      { 
         visitor.begin(*this);
         qpbo_->Solve();
         if(!parameter_.strongPersistency_) {
            qpbo_->ComputeWeakPersistencies();
         } 

         bound_ = constTerm_ + 0.5 * qpbo_->ComputeTwiceLowerBound();
         
         int countUnlabel = 0;
         int *listUnlabel = new int[gm_.numberOfVariables()];
         for(size_t i = 0; i < gm_.numberOfVariables(); ++i) {
            label_[i] = qpbo_->GetLabel(i);
            if(label_[i] < 0) {
               listUnlabel[countUnlabel++] = i;
            }
         }
        
         // Initialize mapping for probe
         int *mapping = new int[gm_.numberOfVariables()];
         for(int i = 0; i < static_cast<int>(gm_.numberOfVariables()); i++) {
            mapping[i] = i * 2;
         }

         /*PROBEING*/
         if(parameter_.useProbeing_ && countUnlabel > 0) {
            typename kolmogorov::qpbo::QPBO<ValueType>::ProbeOptions options;
            //options.C = 1000000000;
            //options.dilation = 1;
            options.weak_persistencies = 1;
            //options.iters = (int)(10);//parameter_.numberOfProbeingIterations_);

            int *new_mapping = new int[gm_.numberOfVariables()];
            qpbo_->Probe(new_mapping, options);
            qpbo_->MergeMappings(gm_.numberOfVariables(), mapping, new_mapping);
            qpbo_->ComputeWeakPersistencies();
            delete new_mapping;

            // Read out entire labelling again (as weak persistencies may have changed)
            countUnlabel = 0;
            for(IndexType i = 0; i < gm_.numberOfVariables(); ++i) {
               label_[i] = qpbo_->GetLabel(mapping[i] / 2);
               if(label_[i] < 0)
                  listUnlabel[countUnlabel++] = i;
               else
                  label_[i] = (label_[i] + mapping[i]) % 2;
            }
         }
         if(parameter_.useImproveing_ && countUnlabel > 0) {
            int *improve_order = new int[countUnlabel];

            // Set the labels to the user-defined value
            for(size_t i = 0; static_cast<int>(i) < countUnlabel; i++) {
               improve_order[i] = mapping[listUnlabel[i]] / 2;
               qpbo_->SetLabel(improve_order[i], defaultLabel_[improve_order[i]]);
            }

            // Randomize order
            for(int i = 0; i < countUnlabel - 1; ++i) {
               int j = i + (int) (((double) rand() / ((double) RAND_MAX + 1)) * (countUnlabel - i));
               OPENGM_ASSERT(j < countUnlabel);
               int k = improve_order[j];
               improve_order[j] = improve_order[i];
               improve_order[i] = k;
            }

            // Run QPBO-I
            qpbo_->Improve(countUnlabel, improve_order);
            delete improve_order;

            // Read out the labels
            for(int i = 0; i < countUnlabel; ++i) {
               label_[listUnlabel[i]] = (qpbo_->GetLabel(mapping[listUnlabel[i]] / 2) + mapping[listUnlabel[i]]) % 2;
            }
         }
       
         visitor.end(*this);
         delete mapping;
	 delete listUnlabel;
         return NORMAL;
      }

      template<class GM>
      inline InferenceTermination
      QPBO<GM>
      ::arg(std::vector<LabelType>& arg, const size_t& n) const {
         if(n > 1) {
            return UNKNOWN;
         }
         else {
            arg.resize(gm_.numberOfVariables());
            for(size_t i = 0; i < gm_.numberOfVariables(); ++i) {
               if(label_[i] < 0) arg[i] = defaultLabel_[i];
               else arg[i] = label_[i];
            }
            return NORMAL;
         }
      }

      template<class GM>
      inline InferenceTermination
      QPBO<GM>
      ::arg(std::vector<TriBool>& arg, const size_t& n) const {
         if(n > 1) {
            return UNKNOWN;
         }
         else {
            arg.resize(gm_.numberOfVariables(), TBX);
            for(int i = 0; i < gm_.numberOfVariables(); ++i) {
               if(label_[i] < 0) arg[i] = TBX;
               if(label_[i] == 0) arg[i] = TB0;
               else arg[i] = TB1;
            }
            return NORMAL;
         }
      }

      template<class GM>
      double  QPBO<GM>::partialOptimality(std::vector<bool>& opt) const
      {
         double p=0; 
         opt.resize(gm_.numberOfVariables());
         for(IndexType i = 0; i < gm_.numberOfVariables(); ++i) {
            if(label_[i] < 0) {opt[i] = 0;}
            else              {opt[i] = 1; ++p;}
         }
         return p/gm_.numberOfVariables();
      }


      template<class GM>
      inline typename GM::ValueType
      QPBO<GM>
      ::bound() const {
         return bound_;//constTerm_ + 0.5 * qpbo_->ComputeTwiceLowerBound();		
      }

      template<class GM>
      inline typename GM::ValueType
      QPBO<GM>
      ::value() const {
         std::vector<LabelType> c;
         arg(c);
         return gm_.evaluate(c);
         //return constTerm_ + 0.5 * qpbo_->ComputeTwiceEnergy();		
      }

   } // namespace external
} // namespace opengm

#endif // #ifndef OPENGM_EXTERNAL_QPBO_HXX