/usr/share/mmass/configs/enzymes.xml is in mmass 5.5.0-4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 | <?xml version="1.0" encoding="utf-8" ?>
<mspyEnzymes version="1.0">
<enzyme name="Arg-C">
<expression><![CDATA[[R][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Asp-N">
<expression><![CDATA[[A-Z][D]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="1" after="0" />
</enzyme>
<enzyme name="Bromelain">
<expression><![CDATA[[KAY][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="CNBr-HSerLac">
<expression><![CDATA[[M][A-Z]]]></expression>
<formula nTerm="H" cTerm="O-1C-1H-3" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Cathepsin B">
<expression><![CDATA[[R][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Cathepsin D">
<expression><![CDATA[[LF][^VAG]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Cathepsin G">
<expression><![CDATA[[YWF][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Chymotrypsin">
<expression><![CDATA[[YWFL][^P]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Clostripain">
<expression><![CDATA[[R][^P]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Elastase">
<expression><![CDATA[[AVLIGS][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Glu-C Bic">
<expression><![CDATA[[E][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Glu-C Phos">
<expression><![CDATA[[ED][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Hydroxylamine">
<expression><![CDATA[[N][G]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="0" />
</enzyme>
<enzyme name="Lys-C">
<expression><![CDATA[[K][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Lys-N">
<expression><![CDATA[[A-Z][K]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="1" after="0" />
</enzyme>
<enzyme name="Non-Specific">
<expression><![CDATA[[A-Z][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="1" after="1" />
</enzyme>
<enzyme name="Papain">
<expression><![CDATA[[RK][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Pepsin">
<expression><![CDATA[[LF][^VAG]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Proteinase K">
<expression><![CDATA[[YWF][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Subtilisin">
<expression><![CDATA[[^RHK][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Thermolysin">
<expression><![CDATA[[A-Z][LFIVMA]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="1" after="0" />
</enzyme>
<enzyme name="TrypAspN">
<expression><![CDATA[(([KR][^P])|([A-Z][D]))]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="0" />
</enzyme>
<enzyme name="TrypChymo">
<expression><![CDATA[[FYWLKR][^P]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Trypsin">
<expression><![CDATA[[KR][^P]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
<enzyme name="Trypsin/P">
<expression><![CDATA[[KR][A-Z]]]></expression>
<formula nTerm="H" cTerm="OH" />
<allowMods before="0" after="1" />
</enzyme>
</mspyEnzymes>
|