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  <div class="section" id="release-notes-for-dipy-version-0-6">
<h1>Release notes for dipy version 0.6<a class="headerlink" href="#release-notes-for-dipy-version-0-6" title="Permalink to this headline">ΒΆ</a></h1>
<p>GitHub stats for 2011/02/12 - 2013/03/20</p>
<p>The following 13 authors contributed 972 commits.</p>
<ul class="simple">
<li>Ariel Rokem</li>
<li>Bago Amirbekian</li>
<li>Eleftherios Garyfallidis</li>
<li>Emanuele Olivetti</li>
<li>Ian Nimmo-Smith</li>
<li>Maria Luisa Mandelli</li>
<li>Matthew Brett</li>
<li>Maxime Descoteaux</li>
<li>Michael Paquette</li>
<li>Samuel St-Jean</li>
<li>Stefan van der Walt</li>
<li>Yaroslav Halchenko</li>
<li>endolith</li>
</ul>
<p>We closed a total of 225 issues, 100 pull requests and 125 regular issues;
this is the full list (generated with the script
<code class="file docutils literal"><span class="pre">tools/github_stats.py</span></code>):</p>
<p>Pull Requests (100):</p>
<ul class="simple">
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/146/">PR #146</a>: BF - allow Bootstrap Wrapper to work with markov tracking</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/143/">PR #143</a>: Garyfallidis tutorials 0.6</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/145/">PR #145</a>: Mdesco dti metrics</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/141/">PR #141</a>: Peak extraction isbi</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/142/">PR #142</a>: RF - always use theta and phi in that order, (not &#8220;phi, theta&#8221;)</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/140/">PR #140</a>: Sf2sh second try at correcting suggestions</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/139/">PR #139</a>: Spherical function to spherical harmonics and back</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/138/">PR #138</a>: Coding style fix for dsi_deconv</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/137/">PR #137</a>: BF - check shapes before allclose</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/136/">PR #136</a>: BF: add top-level benchmarking command</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/135/">PR #135</a>: Refactor local maxima</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/134/">PR #134</a>: BF - fix shm tests to accept antipodal directions as the same</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/133/">PR #133</a>: Corrected test for Deconvolution after the discrete direction finder was removed</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/124/">PR #124</a>: Remove direction finder</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/77/">PR #77</a>: Rework tracking</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/132/">PR #132</a>: A new fvtk function for visualizing fields of odfs</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/131/">PR #131</a>: Add missing files</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/130/">PR #130</a>: Implementation of DSI deconvolution from E.J. Canales-Rodriguez</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/128/">PR #128</a>: Colorfa</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/129/">PR #129</a>: RF - minor cleanup of pdf_odf code</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/127/">PR #127</a>: Adding multi-tensor simulation</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/126/">PR #126</a>: Improve local maxima</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/122/">PR #122</a>: Removed calculation of gfa and other functions from inside the odf(sphere) of DSI and GQI</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/103/">PR #103</a>: Major update of the website, with a few examples and with some additional minor RFs</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/121/">PR #121</a>: NF: Allow the smoothing parameter to come through to rbf interpolation.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/120/">PR #120</a>: Fast squash fix</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/116/">PR #116</a>: RF: common dtype for <a href="#id1"><span class="problematic" id="id2">squash_</span></a> without result_type</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/117/">PR #117</a>: Fix directions on TensorFit and add getitem</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/119/">PR #119</a>: RF: raise errors for Python version dependencies</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/118/">PR #118</a>: Seperate fa</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/111/">PR #111</a>: RF - clean up _squash in multi_voxel and related code</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/112/">PR #112</a>: RF: fix vec_val_vect logic, generalize for shape</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/114/">PR #114</a>: BF: fix face and edge byte order for sphere load</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/109/">PR #109</a>: Faster einsum</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/110/">PR #110</a>: TST: This is only almost equal on XP, for some reason.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/108/">PR #108</a>: TST + STY: Use and assert_equal so that we get more information upon failure</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/107/">PR #107</a>: RF: A.dot(B) =&gt; np.dot(A, B) for numpy &lt; 1.5</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/102/">PR #102</a>: BF - Allow ndindex to work with older numpy than 1.6.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/106/">PR #106</a>: RF: allow optional scipy.spatial.Delaunay</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/105/">PR #105</a>: Skip doctest decorator</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/104/">PR #104</a>: RF: remove deprecated old parametric testing</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/101/">PR #101</a>: WIP: Fix isnan windows</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/100/">PR #100</a>: Small stuff</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/94/">PR #94</a>: Multivoxel dsi and gqi are back!</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/96/">PR #96</a>: ENH: Implement masking for the new TensorModel implementation.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/95/">PR #95</a>: NF fetch publicly available datasets</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/26/">PR #26</a>: Noise</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/84/">PR #84</a>: Non linear peak finding</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/82/">PR #82</a>: DTI new api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/91/">PR #91</a>: Shm new api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/88/">PR #88</a>: NF - wrapper function for multi voxel models</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/86/">PR #86</a>: DOC: Fixed some typos, etc in the FAQ</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/90/">PR #90</a>: A simpler ndindex using generators.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/87/">PR #87</a>: RF - Provide shape as argument to ndindex.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/85/">PR #85</a>: Add fast ndindex.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/81/">PR #81</a>: RF - fixup peaks_from_model to take use remove_similar_vertices and</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/79/">PR #79</a>: BF: Fixed projection plots.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/80/">PR #80</a>: RF - remove some old functions tools</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/71/">PR #71</a>: ENH: Make the internals of the io module visible on tab completion in ip...</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/76/">PR #76</a>: Yay, more gradient stuff</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/75/">PR #75</a>: Rename L2norm to vector_norm</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/74/">PR #74</a>: Gradient rf</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/73/">PR #73</a>: RF/BF - removed duplicate vector_norm/L2norm</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/72/">PR #72</a>: Mr bago model api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/68/">PR #68</a>: DSI seems working again - Have a look</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/65/">PR #65</a>: RF: Make the docstring and call consistent with scipy.interpolate.Rbf.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/61/">PR #61</a>: RF - Refactor direction finding.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/60/">PR #60</a>: NF - Add key-value cache for use in models.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/63/">PR #63</a>: TST - Disable reconstruction methods that break the test suite.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/62/">PR #62</a>: BF - Fix missing import in peak finding tests.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/37/">PR #37</a>: cleanup refrences in the code to E1381S6_edcor* (these were removed from...</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/55/">PR #55</a>: Ravel multi index</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/58/">PR #58</a>: TST - skip doctest when matplotlib is not available</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/59/">PR #59</a>: optional_traits is not needed anymore</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/56/">PR #56</a>: TST: Following change to API in dipy.segment.quickbundles.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/52/">PR #52</a>: Matplotlib optional</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/50/">PR #50</a>: NF - added subdivide method to sphere</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/51/">PR #51</a>: Fix tracking utils</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/48/">PR #48</a>: BF - Brought back _filter peaks and associated test.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/47/">PR #47</a>: RF - Removed reduce_antipodal from sphere.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/41/">PR #41</a>: NF - Add radial basis function interpolation on the sphere.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/39/">PR #39</a>: GradientTable</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/40/">PR #40</a>: BF - Fix axis specification in sph_project.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/28/">PR #28</a>: Odf+shm api update</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/36/">PR #36</a>: Nf hemisphere preview</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/34/">PR #34</a>: RF - replace _filter_peaks with unique_vertices</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/35/">PR #35</a>: BF - Fix imports from dipy.core.sphere.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/21/">PR #21</a>: Viz 2d</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/32/">PR #32</a>: NF - Sphere class.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/30/">PR #30</a>: RF: Don&#8217;t import all this every time.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/24/">PR #24</a>: TST: Fixing tests in reconst module.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/27/">PR #27</a>: DOC - Add reference to white matter diffusion values.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/25/">PR #25</a>: NF - Add prolate white matter as defaults for multi-tensor signal sim.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/22/">PR #22</a>: Updating my fork with the nipy master</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/20/">PR #20</a>: RF - create OptionalImportError for traits imports</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/19/">PR #19</a>: DOC: add comments and example to commit codes</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/18/">PR #18</a>: DOC: update gitwash from source</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/17/">PR #17</a>: Optional traits</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/14/">PR #14</a>: DOC - fix frontpage example</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/12/">PR #12</a>: BF(?): cart2sphere and sphere2cart are now invertible.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/pull/11/">PR #11</a>: BF explicit type declaration and initialization for longest_track_len[AB] &#8211; for cython 0.15 compatibility</li>
</ul>
<p>Issues (125):</p>
<ul class="simple">
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/99/">#99</a>: RF - Separate direction finder from model fit.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/143/">#143</a>: Garyfallidis tutorials 0.6</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/144/">#144</a>: DTI metrics</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/145/">#145</a>: Mdesco dti metrics</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/123/">#123</a>: Web content and examples for 0.6</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/141/">#141</a>: Peak extraction isbi</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/142/">#142</a>: RF - always use theta and phi in that order, (not &#8220;phi, theta&#8221;)</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/140/">#140</a>: Sf2sh second try at correcting suggestions</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/139/">#139</a>: Spherical function to spherical harmonics and back</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/23/">#23</a>: qball not properly import-able</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/29/">#29</a>: Don&#8217;t import everything when you import dipy</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/138/">#138</a>: Coding style fix for dsi_deconv</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/137/">#137</a>: BF - check shapes before allclose</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/136/">#136</a>: BF: add top-level benchmarking command</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/135/">#135</a>: Refactor local maxima</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/134/">#134</a>: BF - fix shm tests to accept antipodal directions as the same</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/133/">#133</a>: Corrected test for Deconvolution after the discrete direction finder was removed</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/124/">#124</a>: Remove direction finder</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/77/">#77</a>: Rework tracking</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/132/">#132</a>: A new fvtk function for visualizing fields of odfs</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/125/">#125</a>: BF: Remove &#8216;mayavi&#8217; directory, to avoid triggering mayavi import warning...</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/131/">#131</a>: Add missing files</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/130/">#130</a>: Implementation of DSI deconvolution from E.J. Canales-Rodriguez</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/128/">#128</a>: Colorfa</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/129/">#129</a>: RF - minor cleanup of pdf_odf code</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/127/">#127</a>: Adding multi-tensor simulation</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/126/">#126</a>: Improve local maxima</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/97/">#97</a>: BF - separate out storing of fit values in gqi</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/122/">#122</a>: Removed calculation of gfa and other functions from inside the odf(sphere) of DSI and GQI</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/103/">#103</a>: Major update of the website, with a few examples and with some additional minor RFs</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/121/">#121</a>: NF: Allow the smoothing parameter to come through to rbf interpolation.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/120/">#120</a>: Fast squash fix</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/116/">#116</a>: RF: common dtype for <a href="#id3"><span class="problematic" id="id4">squash_</span></a> without result_type</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/117/">#117</a>: Fix directions on TensorFit and add getitem</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/119/">#119</a>: RF: raise errors for Python version dependencies</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/118/">#118</a>: Seperate fa</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/113/">#113</a>: RF - use min_diffusivity relative to 1 / max(bval)</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/111/">#111</a>: RF - clean up _squash in multi_voxel and related code</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/112/">#112</a>: RF: fix vec_val_vect logic, generalize for shape</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/114/">#114</a>: BF: fix face and edge byte order for sphere load</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/109/">#109</a>: Faster einsum</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/110/">#110</a>: TST: This is only almost equal on XP, for some reason.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/98/">#98</a>: This is an update of PR #94 mostly typos and coding style</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/108/">#108</a>: TST + STY: Use and assert_equal so that we get more information upon failure</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/107/">#107</a>: RF: A.dot(B) =&gt; np.dot(A, B) for numpy &lt; 1.5</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/102/">#102</a>: BF - Allow ndindex to work with older numpy than 1.6.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/106/">#106</a>: RF: allow optional scipy.spatial.Delaunay</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/105/">#105</a>: Skip doctest decorator</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/104/">#104</a>: RF: remove deprecated old parametric testing</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/101/">#101</a>: WIP: Fix isnan windows</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/100/">#100</a>: Small stuff</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/94/">#94</a>: Multivoxel dsi and gqi are back!</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/96/">#96</a>: ENH: Implement masking for the new TensorModel implementation.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/95/">#95</a>: NF fetch publicly available datasets</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/26/">#26</a>: Noise</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/84/">#84</a>: Non linear peak finding</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/82/">#82</a>: DTI new api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/91/">#91</a>: Shm new api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/88/">#88</a>: NF - wrapper function for multi voxel models</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/86/">#86</a>: DOC: Fixed some typos, etc in the FAQ</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/89/">#89</a>: Consisten ndindex behaviour</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/90/">#90</a>: A simpler ndindex using generators.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/87/">#87</a>: RF - Provide shape as argument to ndindex.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/85/">#85</a>: Add fast ndindex.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/81/">#81</a>: RF - fixup peaks_from_model to take use remove_similar_vertices and</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/83/">#83</a>: Non linear peak finding</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/78/">#78</a>: This PR replaces PR 70</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/79/">#79</a>: BF: Fixed projection plots.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/80/">#80</a>: RF - remove some old functions tools</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/70/">#70</a>: New api dti</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/71/">#71</a>: ENH: Make the internals of the io module visible on tab completion in ip...</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/76/">#76</a>: Yay, more gradient stuff</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/69/">#69</a>: New api and tracking refacotor</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/75/">#75</a>: Rename L2norm to vector_norm</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/74/">#74</a>: Gradient rf</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/73/">#73</a>: RF/BF - removed duplicate vector_norm/L2norm</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/72/">#72</a>: Mr bago model api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/66/">#66</a>: DOCS - docs for model api</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/49/">#49</a>: Reworking tracking code.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/68/">#68</a>: DSI seems working again - Have a look</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/65/">#65</a>: RF: Make the docstring and call consistent with scipy.interpolate.Rbf.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/61/">#61</a>: RF - Refactor direction finding.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/60/">#60</a>: NF - Add key-value cache for use in models.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/63/">#63</a>: TST - Disable reconstruction methods that break the test suite.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/62/">#62</a>: BF - Fix missing import in peak finding tests.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/37/">#37</a>: cleanup refrences in the code to E1381S6_edcor* (these were removed from...</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/55/">#55</a>: Ravel multi index</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/46/">#46</a>: BF: Trying to fix test failures.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/57/">#57</a>: TST: Reverted back to optional definition of the function to make TB hap...</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/58/">#58</a>: TST - skip doctest when matplotlib is not available</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/59/">#59</a>: optional_traits is not needed anymore</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/56/">#56</a>: TST: Following change to API in dipy.segment.quickbundles.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/52/">#52</a>: Matplotlib optional</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/50/">#50</a>: NF - added subdivide method to sphere</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/51/">#51</a>: Fix tracking utils</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/48/">#48</a>: BF - Brought back _filter peaks and associated test.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/47/">#47</a>: RF - Removed reduce_antipodal from sphere.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/41/">#41</a>: NF - Add radial basis function interpolation on the sphere.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/33/">#33</a>: Gradients Table class</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/39/">#39</a>: GradientTable</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/45/">#45</a>: BF - Fix sphere creation in triangle_subdivide.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/38/">#38</a>: Subdivide octahedron</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/40/">#40</a>: BF - Fix axis specification in sph_project.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/28/">#28</a>: Odf+shm api update</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/36/">#36</a>: Nf hemisphere preview</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/34/">#34</a>: RF - replace _filter_peaks with unique_vertices</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/35/">#35</a>: BF - Fix imports from dipy.core.sphere.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/21/">#21</a>: Viz 2d</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/32/">#32</a>: NF - Sphere class.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/30/">#30</a>: RF: Don&#8217;t import all this every time.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/24/">#24</a>: TST: Fixing tests in reconst module.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/27/">#27</a>: DOC - Add reference to white matter diffusion values.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/25/">#25</a>: NF - Add prolate white matter as defaults for multi-tensor signal sim.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/22/">#22</a>: Updating my fork with the nipy master</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/20/">#20</a>: RF - create OptionalImportError for traits imports</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/8/">#8</a>: X error BadRequest with fvtk.show</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/19/">#19</a>: DOC: add comments and example to commit codes</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/18/">#18</a>: DOC: update gitwash from source</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/17/">#17</a>: Optional traits</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/15/">#15</a>: Octahedron in dipy.core.triangle_subdivide has wrong faces</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/14/">#14</a>: DOC - fix frontpage example</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/12/">#12</a>: BF(?): cart2sphere and sphere2cart are now invertible.</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/11/">#11</a>: BF explicit type declaration and initialization for longest_track_len[AB] &#8211; for cython 0.15 compatibility</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/5/">#5</a>: Add DSI reconstruction in Dipy</li>
<li><a class="reference external" href="https://github.com/nipy/dipy/issues/9/">#9</a>: Bug in dipy.tracking.metrics.downsampling when we downsample a track to more than 20 points</li>
</ul>
</div>


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