/usr/lib/python2.7/dist-packages/pymzml/minimum.py is in python-mzml 0.7.4-dfsg-3.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 | # pymzml
#
# Copyright (C) 2010-2011 T. Bald, J. Barth, M. Specht, C. Fufezan
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
MIN_REQ = [
#
#!NOTE! exact names will be extracted of current OBO File, comments are just an orientation
# pymzML comes with a little script (queryOBO.py) to query the obo file
#
# $ ./example_scripts/queryOBO.py "scan time"
# MS:1000016
# scan time
# "The time taken for an acquisition by scanning analyzers." [PSI:MS]
# Is a: MS:1000503 ! scan attribute
#
('MS:1000016',['value'] ), #"scan time" NOTE: that scan time comes with a unit
('MS:1000040',['value'] ), #"m/z"
('MS:1000041',['value'] ), #"charge state"
('MS:1000127',['name'] ), #"centroid spectrum"
('MS:1000128',['name'] ), #"profile spectrum"
('MS:1000133',['name'] ), #"collision-induced dissociation"
('MS:1000285',['value'] ), #"total ion current"
('MS:1000422',['name'] ), #"high-energy collision-induced dissociation"
('MS:1000511',['value'] ), #"ms level"
('MS:1000512',['value'] ), #"filter string"
('MS:1000514',['name'] ), #"m/z array"
('MS:1000515',['name'] ), #"intensity array"
('MS:1000595',['name'] ), #"time array"
('MS:1000521',['name'] ), #"32-bit float"
('MS:1000523',['name'] ), #"64-bit float"
('MS:1000574',['name'] ), #"zlib compression"
('MS:1000576',['name'] ), #"no compression"
('MS:1000744',['value'] ), # legacy precursor mz value ...
('MS:1000235',['name'] ), # total ion current chromatogram
]
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