/usr/lib/python2.7/dist-packages/pbcommand/schemas/tool_contract.avsc is in python-pbcommand 0.2.17-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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"namespace": "com.pacbio.common.models.contracts",
"type": "record",
"name": "ToolContract",
"fields": [
{
"name": "tool_contract",
"type": {
"type": "record",
"name": "ToolContractTask",
"fields": [
{
"name": "input_types",
"type": {
"type": "array",
"items": {
"type": "record",
"name": "ToolInputFile",
"fields": [
{
"name": "id",
"type": "string"
},
{
"doc": "PacBio File Type identifier",
"name": "file_type_id",
"type": "string"
},
{
"doc": "Display Name",
"name": "title",
"type": "string"
},
{
"name": "description",
"type": "string"
}
]
}
}
},
{
"name": "output_types",
"type": {
"type": "array",
"items": {
"type": "record",
"name": "ToolOutputFile",
"fields": [
{
"name": "id",
"type": "string"
},
{
"doc": "PacBio FileType identifier",
"name": "file_type_id",
"type": "string"
},
{
"doc": "Display Name",
"name": "title",
"type": "string"
},
{
"doc": "Default file name",
"name": "default_name",
"type": "string"
},
{
"name": "description",
"type": "string"
}
]
}
}
},
{
"name": "schema_options",
"type": {
"type": "array",
"items": {
"type": "record",
"name": "PacBioOptions",
"fields": [
{
"name": "pb_option",
"type": {
"type": "record",
"name": "pb_option",
"fields": [
{
"name": "default",
"type": [
"int",
"string",
"boolean",
"float"
]
},
{
"name": "option_id",
"type": "string"
},
{
"name": "name",
"type": "string"
},
{
"name": "description",
"type": "string"
}
]
}
}
]
}
}
},
{
"doc": "Number of processors to use",
"name": "nproc",
"type": "int"
},
{
"doc": "Globally unique Tool Contract identifier",
"name": "tool_contract_id",
"type": "string"
},
{
"doc": "Task class type, Standard, Scatter, Gather",
"name": "task_type",
"type": "string"
},
{
"doc": "Determine if the task will be submitted to the cluster resources",
"name": "is_distributed",
"type": "boolean"
},
{
"name": "resource_types",
"type": {
"type": "array",
"items": {
"type": "string"
}
}
}
]
}
},
{
"name": "driver",
"type": {
"type": "record",
"name": "ToolDriver",
"fields": [
{
"name": "exe",
"type": "string"
}
]
}
}
]
}
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