/usr/lib/R/site-library/AnnotationDbi/INDEX is in r-bioc-annotationdbi 1.32.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 | ACCNUM Descriptions of available values for 'columns'
and 'keytypes'.
ACYRTHOSIPHON_PISUM Descriptions of available values for 'columns'
and 'keytypes' for inparanpoid packages.
AnnDbObj-objects AnnDbObj objects
AnnDbPkg-checker Check the SQL data contained in an SQLite-based
annotation package
AnnotationDb AnnotationDb objects and their progeny, methods
etc.
Bimap Bimap objects and the Bimap interface
Bimap-direction Methods for getting/setting the direction of a
Bimap object, and undirected methods for
getting/counting/setting its keys
Bimap-envirAPI Environment-like API for Bimap objects
Bimap-keys Methods for manipulating the keys of a Bimap
object
Bimap-toTable Methods for manipulating a Bimap object in a
data-frame style
BimapFormatting Formatting a Bimap as a list or character
vector
GOFrame GOFrame and GOAllFrame objects
GOID Descriptions of available values for 'columns'
and 'keytypes' for GO.db.
GOTerms-class Class "GOTerms"
KEGGFrame KEGGFrame objects
createSimpleBimap Creates a simple Bimap from a SQLite database
in an situation that is external to
AnnotationDbi
inpIDMapper Convenience functions for mapping IDs through
an appropriate set of annotation packages
makeGOGraph A convenience function to generate graphs based
on the GO.db package
make_eg_to_go_map Create GO to Entrez Gene maps for chip-based
packages
print.probetable Print method for probetable objects
toSQLStringSet Convert a vector to a quoted string for use as
a SQL value list
toggleProbes Methods for getting/setting the filters on a
Bimap object
unlist2 A replacement for unlist() that does not mangle
the names
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