/usr/lib/R/site-library/BiocGenerics/help/AnIndex is in r-bioc-biocgenerics 0.16.0-1.
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annotation annotation
annotation<- annotation
anyDuplicated duplicated
append append
as.data.frame as.data.frame
as.vector as.vector
AsIs-class S3-classes-as-S4-classes
BiocGenerics BiocGenerics-package
boxplot boxplot
bzfile-class S3-classes-as-S4-classes
cbind cbind
characterORconnection-class S3-classes-as-S4-classes
clusterApply clusterApply
clusterApplyLB clusterApply
clusterCall clusterApply
clusterEvalQ clusterApply
clusterExport clusterApply
clusterMap clusterApply
clusterSplit clusterApply
colnames row_colnames
colnames<- row_colnames
combine combine
combine,ANY,missing-method combine
combine,data.frame,data.frame-method combine
combine,matrix,matrix-method combine
conditions dge
conditions<- dge
connection-class S3-classes-as-S4-classes
counts dge
counts<- dge
dbconn dbconn
dbfile dbconn
density density
design dge
design<- dge
dispTable dge
dispTable<- dge
dist-class S3-classes-as-S4-classes
do.call do.call
duplicated duplicated
end start
end<- start
estimateDispersions dge
estimateSizeFactors dge
eval eval
evalq evalq
Extremes Extremes
fifo-class S3-classes-as-S4-classes
file-class S3-classes-as-S4-classes
fileName fileName
Filter funprog
Find funprog
funprog funprog
get get
getObjectSlots updateObject
grep grep
grepl grep
gzcon-class S3-classes-as-S4-classes
gzfile-class S3-classes-as-S4-classes
image image
intersect sets
IQR IQR
is.unsorted is.unsorted
lapply lapply
lengths lengths
mad mad
Map funprog
mapply mapply
match match
mget get
NCOL nrow
ncol nrow
normalize normalize
NROW nrow
nrow nrow
order order
organism organism_species
organism<- organism_species
organism_species organism_species
parApply clusterApply
parCapply clusterApply
parLapply clusterApply
parLapplyLB clusterApply
parRapply clusterApply
parSapply clusterApply
parSapplyLB clusterApply
paste paste
pipe-class S3-classes-as-S4-classes
plotDispEsts dge
plotMA plotMA
plotMA,ANY-method plotMA
plotPCA plotPCA
plotPCA,ANY-method plotPCA
pmax Extremes
pmax.int Extremes
pmin Extremes
pmin.int Extremes
Position funprog
rank rank
rbind cbind
Reduce funprog
relist relist
rep.int rep
residuals residuals
row+colnames row_colnames
rownames row_colnames
rownames<- row_colnames
S3-classes-as-S4-classes S3-classes-as-S4-classes
sapply lapply
score score
score<- score
setdiff sets
sets sets
sizeFactors dge
sizeFactors<- dge
sockconn-class S3-classes-as-S4-classes
sort sort
species organism_species
species<- organism_species
start start
start<- start
strand strand
strand<- strand
subset subset
table table
tapply tapply
terminal-class S3-classes-as-S4-classes
testPackage testPackage
textConnection-class S3-classes-as-S4-classes
union sets
unique unique
unlist unlist
unsplit unsplit
unstrand strand
unz-class S3-classes-as-S4-classes
updateObject updateObject
updateObject,ANY-method updateObject
updateObject,environment-method updateObject
updateObject,list-method updateObject
updateObjectFromSlots updateObject
url-class S3-classes-as-S4-classes
weights weights
width start
width<- start
xtabs xtabs
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