/usr/lib/R/site-library/Gviz/extdata/test.gff2 is in r-bioc-gviz 1.14.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 | ##gff-version 2
##source-version rtracklayer 1.19.6
##date 2012-12-08
chr1 UCSC exon 66999825 67000051 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 1;exon_id NM_032291.1;gene_name SGIP1
chr1 UCSC 5UTR 66999825 67000041 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 1;exon_id NM_032291.1;gene_name SGIP1
chr1 UCSC CDS 67000042 67000051 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 1;exon_id NM_032291.1;gene_name SGIP1
chr1 UCSC exon 67091530 67091593 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 2;exon_id NM_032291.2;gene_name SGIP1
chr1 UCSC CDS 67091530 67091593 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 2;exon_id NM_032291.2;gene_name SGIP1
chr1 UCSC exon 67098753 67098777 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 3;exon_id NM_032291.3;gene_name SGIP1
chr1 UCSC CDS 67098753 67098777 . + 1 gene_id SGIP1;transcript_id NM_032291;exon_number 3;exon_id NM_032291.3;gene_name SGIP1
chr1 UCSC exon 67101627 67101698 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 4;exon_id NM_032291.4;gene_name SGIP1
chr1 UCSC CDS 67101627 67101698 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 4;exon_id NM_032291.4;gene_name SGIP1
chr1 UCSC exon 67105460 67105516 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 5;exon_id NM_032291.5;gene_name SGIP1
chr1 UCSC CDS 67105460 67105516 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 5;exon_id NM_032291.5;gene_name SGIP1
chr1 UCSC exon 67108493 67108547 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 6;exon_id NM_032291.6;gene_name SGIP1
chr1 UCSC CDS 67108493 67108547 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 6;exon_id NM_032291.6;gene_name SGIP1
chr1 UCSC exon 67109227 67109402 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 7;exon_id NM_032291.7;gene_name SGIP1
chr1 UCSC CDS 67109227 67109402 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 7;exon_id NM_032291.7;gene_name SGIP1
chr1 UCSC exon 67126196 67126207 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 8;exon_id NM_032291.8;gene_name SGIP1
chr1 UCSC CDS 67126196 67126207 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 8;exon_id NM_032291.8;gene_name SGIP1
chr1 UCSC exon 67133213 67133224 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 9;exon_id NM_032291.9;gene_name SGIP1
chr1 UCSC CDS 67133213 67133224 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 9;exon_id NM_032291.9;gene_name SGIP1
chr1 UCSC exon 67136678 67136702 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 10;exon_id NM_032291.10;gene_name SGIP1
chr1 UCSC CDS 67136678 67136702 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 10;exon_id NM_032291.10;gene_name SGIP1
chr1 UCSC exon 67137627 67137678 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 11;exon_id NM_032291.11;gene_name SGIP1
chr1 UCSC CDS 67137627 67137678 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 11;exon_id NM_032291.11;gene_name SGIP1
chr1 UCSC exon 67138964 67139049 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 12;exon_id NM_032291.12;gene_name SGIP1
chr1 UCSC CDS 67138964 67139049 . + 1 gene_id SGIP1;transcript_id NM_032291;exon_number 12;exon_id NM_032291.12;gene_name SGIP1
chr1 UCSC exon 67142687 67142779 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 13;exon_id NM_032291.13;gene_name SGIP1
chr1 UCSC CDS 67142687 67142779 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 13;exon_id NM_032291.13;gene_name SGIP1
chr1 UCSC exon 67145361 67145435 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 14;exon_id NM_032291.14;gene_name SGIP1
chr1 UCSC CDS 67145361 67145435 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 14;exon_id NM_032291.14;gene_name SGIP1
chr1 UCSC exon 67147552 67148052 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 15;exon_id NM_032291.15;gene_name SGIP1
chr1 UCSC CDS 67147552 67148052 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 15;exon_id NM_032291.15;gene_name SGIP1
chr1 UCSC exon 67154831 67154958 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 16;exon_id NM_032291.16;gene_name SGIP1
chr1 UCSC CDS 67154831 67154958 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 16;exon_id NM_032291.16;gene_name SGIP1
chr1 UCSC exon 67155873 67155999 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 17;exon_id NM_032291.17;gene_name SGIP1
chr1 UCSC CDS 67155873 67155999 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 17;exon_id NM_032291.17;gene_name SGIP1
chr1 UCSC exon 67161117 67161176 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 18;exon_id NM_032291.18;gene_name SGIP1
chr1 UCSC CDS 67161117 67161176 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 18;exon_id NM_032291.18;gene_name SGIP1
chr1 UCSC exon 67184977 67185088 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 19;exon_id NM_032291.19;gene_name SGIP1
chr1 UCSC CDS 67184977 67185088 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 19;exon_id NM_032291.19;gene_name SGIP1
chr1 UCSC exon 67194947 67195102 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 20;exon_id NM_032291.20;gene_name SGIP1
chr1 UCSC CDS 67194947 67195102 . + 1 gene_id SGIP1;transcript_id NM_032291;exon_number 20;exon_id NM_032291.20;gene_name SGIP1
chr1 UCSC exon 67199431 67199563 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 21;exon_id NM_032291.21;gene_name SGIP1
chr1 UCSC CDS 67199431 67199563 . + 1 gene_id SGIP1;transcript_id NM_032291;exon_number 21;exon_id NM_032291.21;gene_name SGIP1
chr1 UCSC exon 67205018 67205220 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 22;exon_id NM_032291.22;gene_name SGIP1
chr1 UCSC CDS 67205018 67205220 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 22;exon_id NM_032291.22;gene_name SGIP1
chr1 UCSC exon 67206341 67206405 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 23;exon_id NM_032291.23;gene_name SGIP1
chr1 UCSC CDS 67206341 67206405 . + 1 gene_id SGIP1;transcript_id NM_032291;exon_number 23;exon_id NM_032291.23;gene_name SGIP1
chr1 UCSC exon 67206955 67207119 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 24;exon_id NM_032291.24;gene_name SGIP1
chr1 UCSC CDS 67206955 67207119 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 24;exon_id NM_032291.24;gene_name SGIP1
chr1 UCSC exon 67208756 67210768 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 25;exon_id NM_032291.25;gene_name SGIP1
chr1 UCSC CDS 67208756 67208775 . + 2 gene_id SGIP1;transcript_id NM_032291;exon_number 25;exon_id NM_032291.25;gene_name SGIP1
chr1 UCSC 3UTR 67208779 67210768 . + . gene_id SGIP1;transcript_id NM_032291;exon_number 25;exon_id NM_032291.25;gene_name SGIP1
chr1 UCSC start_codon 67000042 67000044 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 1;exon_id NM_032291.1;gene_name SGIP1
chr1 UCSC stop_codon 67208776 67208778 . + 0 gene_id SGIP1;transcript_id NM_032291;exon_number 1;exon_id NM_032291.1;gene_name SGIP1
chr1 UCSC exon 8384390 8384786 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 1;exon_id NM_001080397.1;gene_name SLC45A1
chr1 UCSC CDS 8384390 8384786 . + 0 gene_id SLC45A1;transcript_id NM_001080397;exon_number 1;exon_id NM_001080397.1;gene_name SLC45A1
chr1 UCSC exon 8385358 8385450 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 2;exon_id NM_001080397.2;gene_name SLC45A1
chr1 UCSC CDS 8385358 8385450 . + 2 gene_id SLC45A1;transcript_id NM_001080397;exon_number 2;exon_id NM_001080397.2;gene_name SLC45A1
chr1 UCSC exon 8385878 8386102 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 3;exon_id NM_001080397.3;gene_name SLC45A1
chr1 UCSC CDS 8385878 8386102 . + 2 gene_id SLC45A1;transcript_id NM_001080397;exon_number 3;exon_id NM_001080397.3;gene_name SLC45A1
chr1 UCSC exon 8390269 8390996 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 4;exon_id NM_001080397.4;gene_name SLC45A1
chr1 UCSC CDS 8390269 8390996 . + 2 gene_id SLC45A1;transcript_id NM_001080397;exon_number 4;exon_id NM_001080397.4;gene_name SLC45A1
chr1 UCSC exon 8395497 8395650 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 5;exon_id NM_001080397.5;gene_name SLC45A1
chr1 UCSC CDS 8395497 8395650 . + 0 gene_id SLC45A1;transcript_id NM_001080397;exon_number 5;exon_id NM_001080397.5;gene_name SLC45A1
chr1 UCSC exon 8397876 8398052 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 6;exon_id NM_001080397.6;gene_name SLC45A1
chr1 UCSC CDS 8397876 8398052 . + 2 gene_id SLC45A1;transcript_id NM_001080397;exon_number 6;exon_id NM_001080397.6;gene_name SLC45A1
chr1 UCSC exon 8399553 8399758 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 7;exon_id NM_001080397.7;gene_name SLC45A1
chr1 UCSC CDS 8399553 8399758 . + 2 gene_id SLC45A1;transcript_id NM_001080397;exon_number 7;exon_id NM_001080397.7;gene_name SLC45A1
chr1 UCSC exon 8403807 8404227 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 8;exon_id NM_001080397.8;gene_name SLC45A1
chr1 UCSC CDS 8403807 8404070 . + 0 gene_id SLC45A1;transcript_id NM_001080397;exon_number 8;exon_id NM_001080397.8;gene_name SLC45A1
chr1 UCSC 3UTR 8404074 8404227 . + . gene_id SLC45A1;transcript_id NM_001080397;exon_number 8;exon_id NM_001080397.8;gene_name SLC45A1
chr1 UCSC start_codon 8384390 8384392 . + 0 gene_id SLC45A1;transcript_id NM_001080397;exon_number 1;exon_id NM_001080397.1;gene_name SLC45A1
chr1 UCSC stop_codon 8404071 8404073 . + 0 gene_id SLC45A1;transcript_id NM_001080397;exon_number 1;exon_id NM_001080397.1;gene_name SLC45A1
chr1 UCSC exon 25071760 25072116 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 1;exon_id NM_013943.1;gene_name CLIC4
chr1 UCSC 5UTR 25071760 25072044 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 1;exon_id NM_013943.1;gene_name CLIC4
chr1 UCSC CDS 25072045 25072116 . + 0 gene_id CLIC4;transcript_id NM_013943;exon_number 1;exon_id NM_013943.1;gene_name CLIC4
chr1 UCSC exon 25124233 25124342 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 2;exon_id NM_013943.2;gene_name CLIC4
chr1 UCSC CDS 25124233 25124342 . + 0 gene_id CLIC4;transcript_id NM_013943;exon_number 2;exon_id NM_013943.2;gene_name CLIC4
chr1 UCSC exon 25140585 25140710 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 3;exon_id NM_013943.3;gene_name CLIC4
chr1 UCSC CDS 25140585 25140710 . + 1 gene_id CLIC4;transcript_id NM_013943;exon_number 3;exon_id NM_013943.3;gene_name CLIC4
chr1 UCSC exon 25153501 25153607 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 4;exon_id NM_013943.4;gene_name CLIC4
chr1 UCSC CDS 25153501 25153607 . + 1 gene_id CLIC4;transcript_id NM_013943;exon_number 4;exon_id NM_013943.4;gene_name CLIC4
chr1 UCSC exon 25166351 25166532 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 5;exon_id NM_013943.5;gene_name CLIC4
chr1 UCSC CDS 25166351 25166532 . + 2 gene_id CLIC4;transcript_id NM_013943;exon_number 5;exon_id NM_013943.5;gene_name CLIC4
chr1 UCSC exon 25167264 25170815 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 6;exon_id NM_013943.6;gene_name CLIC4
chr1 UCSC CDS 25167264 25167425 . + 0 gene_id CLIC4;transcript_id NM_013943;exon_number 6;exon_id NM_013943.6;gene_name CLIC4
chr1 UCSC 3UTR 25167429 25170815 . + . gene_id CLIC4;transcript_id NM_013943;exon_number 6;exon_id NM_013943.6;gene_name CLIC4
chr1 UCSC start_codon 25072045 25072047 . + 0 gene_id CLIC4;transcript_id NM_013943;exon_number 1;exon_id NM_013943.1;gene_name CLIC4
chr1 UCSC stop_codon 25167426 25167428 . + 0 gene_id CLIC4;transcript_id NM_013943;exon_number 1;exon_id NM_013943.1;gene_name CLIC4
chr1 UCSC exon 16767167 16767348 . + . gene_id NECAP2;transcript_id NM_018090;exon_number 1;exon_id NM_018090.1;gene_name NECAP2
chr1 UCSC 5UTR 16767167 16767256 . + . gene_id NECAP2;transcript_id NM_018090;exon_number 1;exon_id NM_018090.1;gene_name NECAP2
chr1 UCSC CDS 16767257 16767348 . + 0 gene_id NECAP2;transcript_id NM_018090;exon_number 1;exon_id NM_018090.1;gene_name NECAP2
chr1 UCSC exon 16770127 16770227 . + . gene_id NECAP2;transcript_id NM_018090;exon_number 2;exon_id NM_018090.2;gene_name NECAP2
chr1 UCSC CDS 16770127 16770227 . + 1 gene_id NECAP2;transcript_id NM_018090;exon_number 2;exon_id NM_018090.2;gene_name NECAP2
chr1 UCSC exon 16774365 16774469 . + . gene_id NECAP2;transcript_id NM_018090;exon_number 3;exon_id NM_018090.3;gene_name NECAP2
chr1 UCSC CDS 16774365 16774469 . + 2 gene_id NECAP2;transcript_id NM_018090;exon_number 3;exon_id NM_018090.3;gene_name NECAP2
chr1 UCSC exon 16774555 16774636 . + . gene_id NECAP2;transcript_id NM_018090;exon_number 4;exon_id NM_018090.4;gene_name NECAP2
chr1 UCSC CDS 16774555 16774636 . + 2 gene_id NECAP2;transcript_id NM_018090;exon_number 4;exon_id NM_018090.4;gene_name NECAP2
chr1 UCSC exon 16775588 16775696 . + . gene_id NECAP2;transcript_id NM_018090;exon_number 5;exon_id NM_018090.5;gene_name NECAP2
chr1 UCSC CDS 16775588 16775696 . + 1 gene_id NECAP2;transcript_id NM_018090;exon_number 5;exon_id NM_018090.5;gene_name NECAP2
|