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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | # Amino acid property index
# The first 10 properties are derived from the venn diagram of
# Taylor 1986 (J. Theor. Biol. 119, 205-218) and the work of
# Zvelebil 1987 (J. Mol. Biol. 195, 957-961).
# Properties 'burried', 'surface' and 'neutral' are based on
# relative hydrophobicity and the extent to which residues are
# distributed between the surface and interior of known structures,
# see Chothia 1998 (J. Mol. Biol. 278, 457-479 ) and the work of
# Miller 1986 (J. Mol. Biol. 196, 641-656)
I L V C A G M F Y W H K R E Q D N S T P B Z X -
hydrophobic 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 1 0 0 0 1 0
polar 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0
small 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 1 1 1 1 1 0 0 1 0
proline 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0
tiny 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0
aliphatic 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
aromatic 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0
positive 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 1 0
negative 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 1 0
charged 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 0 1 0
special 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0
burried 1 1 1 1 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0
surface 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 1 0
neutral 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 0 1 1 1 0 0 1 0
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