/usr/share/singular/LIB/resgraph.lib is in singular-data 4.0.3+ds-1.
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version="version resgraph.lib 4.0.0.0 Jun_2013 "; // $Id: c9ad90e46bae6ab8da94f0274c0d903107549129 $
category="Visualization";
info="
LIBRARY: resgraph.lib Visualization of Resolution Data
AUTHOR: A. Fruehbis-Krueger, anne@mathematik.uni-kl.de,
NOTE: This library uses the external programs surf, graphviz and imagemagick.
@* Input data is assumed to originate from resolve.lib and reszeta.lib
PROCEDURES:
InterDiv(M[,name]) dual graph of resolution of a surface (uses graphviz,imagemagick)
ResTree(L,M[,name]) tree of charts of resolution (uses graphviz,imagemagick)
finalCharts(L,...) pictures of final charts of surface (uses surf)
";
proc InterDiv(intmat M, list #)
"USAGE: InterDiv(M[,name]);
@* M = matrix
@* name = string
ASSUME: - M is first list entry of output of 'intersectionDiv'
@* from library reszeta.lib
@* - write permission in the current directory or in the
@* directory in which the file with name 'name' resides
CREATE: file 'name.jpg' containing dual graph of resolution
@* if filename is given
NOTE: only available on UNIX-type systems and programs
@* 'display' (imagemagick package) and 'dot' (Graphviz package) need to
@* be in the standard search PATH
RETURN: nothing, only generating graphics output in separate window
EXAMPLE: not available (for technical reasons)
"
{
"Warning: alpha testing version of this procedure";
int i,j;
string tempstr;
//---------------------------------------------------------------------------
// build up temporary filename and open file for writing
//---------------------------------------------------------------------------
if(size(#)>0)
{
if((typeof(#[1])=="string") && (goodFilename(#[1])))
{
string @filename=#[1];
}
else
{
ERROR("Second argument should specify a WRITABLE file");
}
}
if(!defined(@filename))
{
string @filename=buildFilename("InterDiv.dot");
}
link eing=":w "+@filename;
//--------------------------------------------------------------------------
// write input for external program dot to file
//--------------------------------------------------------------------------
write(eing,"graph G{");
for(i=1;i<=ncols(M);i++)
{
if(M[i,i]!=-2)
{
tempstr=string(i)+"[shape=circle,label=\""+string(M[i,i])+"\"];";
}
else
{
tempstr=string(i)+"[shape=point,label=\" \"];";
}
write(eing,tempstr);
}
for(i=1;i<=nrows(M);i++)
{
for(j=i+1;j<=ncols(M);j++)
{
if(M[i,j]!=0)
{
tempstr=string(i) + "--" + string(j) + ";";
write(eing,tempstr);
}
}
}
write(eing,"}");
close(eing);
//---------------------------------------------------------------------------
// produce graphics output using the programs dot and display
//---------------------------------------------------------------------------
string outfile=@filename + ".jpg";
if(!find(outfile,"/"))
{
//--- display needs fully qualified path to file
outfile=system("getenv","PWD") + "/" + outfile;
}
j=system("sh","dot -Tjpg " + @filename + " -o "+ outfile);
j=system("sh","display " + outfile + " &");
//---------------------------------------------------------------------------
// clean up if necessary
//---------------------------------------------------------------------------
"Currently showing graphics in separate window";
"Press <Return> to continue";
pause();
if((size(#)==0)&&(find(@filename,"/tmp/")))
{
//--- do not leave any garbage in the public directories
j=system("sh","command rm " + outfile + " " + @filename);
}
return();
}
///////////////////////////////////////////////////////////////////////////////
//static
proc goodFilename(string datei)
{
//--- check whether the specified file datei is writable for us
if(!system("sh","touch " + datei + " > /dev/null 2>&1"))
{
return(1);
}
else
{
return(0);
}
}
//////////////////////////////////////////////////////////////////////////////
//static
proc buildFilename(string datei)
{
if(goodFilename(datei))
{
return(datei);
}
if(find(datei,"/"))
{
ERROR("Specified directory/file is not writable");
}
datei="/tmp/" + datei;
if(goodFilename(datei))
{
return(datei);
}
//--- not reached
ERROR("At least /tmp should be writable");
}
///////////////////////////////////////////////////////////////////////////////
proc ResTree(list re, intmat DivMat, list #)
"USAGE: ResTree(L,M[,name][,mark]);
@* L = list
@* M = matrix
@* name = string
@* mark = intvec
ASSUME: - L is the output of 'resolve' from resolve.lib
@* - M is first entry of output of 'collectDiv(L);' from reszeta.lib
@* - write permission in the current directory or in the
@* directory in which the file with name 'name' resides
@* - mark intvec of size size(L[2])
@* mark[i]=0 (default) border of box black
@* mark[i]=1 border of box red
CREATE: file 'name.jpg' containing the tree of charts of L
@* if filename is given
NOTE: only available on UNIX-type systems and programs
@* 'display' (imagemagick package) and 'dot' (Graphviz package) need to
@* be in the standard search PATH
RETURN: nothing, only generating graphics output in separate window
EXAMPLE: not available (for technical reasons)
"
{
//-----------------------------------------------------------------------------
// Initialization and definition of the temporary filename
//-----------------------------------------------------------------------------
int i,j,dimC,jsave;
string tempstr;
def R=basering;
if(size(#)>0)
{
if(typeof(#[1])=="string")
{
if(goodFilename(#[1]))
{
string @filename=#[1];
}
else
{
ERROR("optional argument of type string "+
"should specify a writable file.");
}
}
if(typeof(#[1])=="intvec")
{
intvec @rot=#[1];
}
}
if(size(#)>1)
{
if((typeof(#[2])=="string")&&(!defined(@filename)))
{
if(goodFilename(#[1]))
{
string @filename=#[1];
}
else
{
ERROR("optional argument of type string "+
"should specify a writable file.");
}
}
if((typeof(#[2])=="intvec")&&(!defined(@rot)))
{
intvec @rot=#[2];
}
}
if(!defined(@filename))
{
string @filename=buildFilename("ResTree.dot");
}
if(!defined(@rot))
{
intvec @rot;
@rot[size(re[2])]=0;
}
link eing=":w "+@filename;
//----------------------------------------------------------------------------
// writing the input to the program dot into a file
//----------------------------------------------------------------------------
write(eing,"graph G{");
tempstr="1[shape=box,label=\"chart 1\"];";
write(eing,tempstr);
for(i=2;i<=size(re[2]);i++)
{
tempstr=string(i)+"[shape=box,label=\"chart " + string(i)
+ "\\nE:"+string(simplify(ideal(DivMat[i,1..ncols(DivMat)]),2))
+ " \"";
if(@rot[i]==1)
{
tempstr=tempstr + "color=\"red\"];";
}
else
{
tempstr=tempstr + "];";
}
write(eing,tempstr);
}
for(i=2;i<=size(re[2]);i++)
{
def S=re[2][i];
setring S;
j=int(leadcoef(path[1,ncols(path)]));
if(j!=jsave)
{
def T=re[2][j];
setring T;
dimC=dim(std(BO[1]+cent));
setring S;
kill T;
}
setring R;
kill S;
if(j!=jsave)
{
tempstr=string(j) + "--" + string(i) +"[label=\"d=" + string(dimC)
+ "\"];";
jsave=j;
}
else
{
tempstr=string(j) + "--" + string(i) +";";
}
write(eing,tempstr);
}
write(eing,"}");
close(eing);
//---------------------------------------------------------------------------
// Create the graphics output using the programs dot and display
//---------------------------------------------------------------------------
string outfile=@filename + ".jpg";
if(!find(outfile,"/"))
{
//--- display needs fully qualified path to file
outfile=system("getenv","PWD") + "/" + outfile;
}
j=system("sh", "dot -Tjpg " + @filename + " -o "+ outfile);
j=system("sh","display " + outfile + "&");
//---------------------------------------------------------------------------
// Clean up public directories if necessary
//---------------------------------------------------------------------------
"Currently showing graphics in separate window";
"Press <Return> to continue";
pause();
if(find(@filename,"/tmp/"))
{
//--- do not leave any garbage in the public directories
j=system("sh","command rm " + @filename + ".jpg "+ @filename);
}
return();
}
/////////////////////////////////////////////////////////////////////////////
proc finalCharts(list re, list inter, intvec endiv, list #)
"USAGE: finalCharts(L1,L2,iv[,name]);
@* L1 = list
@* L2 = list
@* iv = intvec
@* name = string
ASSUME: - L1 is the output of 'resolve' from resolve.lib
@* - L2 is the output of 'intersectionDiv(L1)' from reszeta.lib
@* - iv is the first entry of the output of 'abstractR(L1)'
@* - write permission in the current directory or in the
@* directory in which the file with name 'name' resides
CREATE: - new windows in which surf-images of the final charts are presented
@* - several '.ras' files in the directory in which 'name' resides
NOTE: only available on UNIX-type systems
@* external programs 'surf' and 'display' (imagemagick package) need to be
@* in the standard search PATH
RETURN: nothing, only generating graphics output in separate window
EXAMPLE: not available (for technical reasons)
"
{
//-----------------------------------------------------------------------------
// Initialization and Sanity Checks
//-----------------------------------------------------------------------------
int i,j,k,a,b,cnt,whichE,offset,haveDcE8;
def R=basering;
list endCharts;
string fname,tempstr;
for(i=1;i<=size(endiv);i++)
{
if(endiv[i]==1)
{
endCharts[size(endCharts)+1]=i;
//--- Sanity checks for the chart i
if(nvars(re[2][i])!=3)
{
ERROR("This chart is not embedded in 3-dimensional space");
}
if(defined(S)){kill S;}
def S=re[2][i];
setring S;
if(dim(std(BO[1]+BO[2]))!=2)
{
ERROR("Strict Transform is not a surface");
}
if(size(equidim(BO[1]+BO[2]))!=1)
{
ERROR("Strict Transform has lower dimensional components.");
}
//--- put the missing information into dcE, if necessary
for(k=1;k<=size(dcE);k++)
{
for(j=1;j<=size(dcE[k]);j++)
{
if(deg(std(dcE[k][j][1])[1])!=0)
{
if(size(dcE[k][j][1]) < 8)
{
setring R;
k=prepareDcE(re,inter,endiv);
setring S;
}
haveDcE8=1;
break;
}
}
if(haveDcE8!=0) break;
}
setring R;
}
}
if(!defined(colorlist))
{
list colorlist;
for(i=1;i<=10;i++)
{
colorlist[i]="curve_red = "+string((i-1)*25)+"; curve_green = "+
string(255-(i-1)*25)+"; curve_blue = "+
string(((i-1) mod 5)*50)+";";
}
}
else
{
"Warning!";
"Using colors specified in variable colorlist. No syntax checks";
"performed on the content of this list.";
"If built-in colors should be used, please rename the global";
"object colorlist";
}
if(ncols(inter[1])>size(colorlist))
{
ERROR("Too many exceptional curves on this surface.....");
}
if((size(endCharts)>20)&&(size(#)==0))
{
ERROR("More than 20 final charts...");
}
//-----------------------------------------------------------------------------
// Determine the basename of the temporary files
//-----------------------------------------------------------------------------
if(size(#)>0)
{
if((typeof(#[1])=="string") && (goodFilename(#[1])))
{
string fnamebase=#[1];
}
else
{
ERROR("Second argument should specify a WRITABLE file");
}
}
if(!defined(@fnamebase))
{
string fnamebase=buildFilename("Chart");
}
//-----------------------------------------------------------------------------
// Go through all final charts and write a separate surf input file for each
//-----------------------------------------------------------------------------
for(i=1;i<=size(endCharts);i++)
{
fname=fnamebase + string(endCharts[i]) + ".surf";
if(defined(eing)){kill eing;}
link eing=":w "+fname;
//--- define surf's root finding algorithm
tempstr="root_finder = d_chain_bisection; epsilon = 0.000000001;";
write(eing,tempstr);
//--- define image size
tempstr="int wid = 480;width = wid; height = wid;";
write(eing,tempstr);
//--- define ambient lighting
tempstr="ambient=50;";
write(eing,tempstr);
//--- define background colour: some shade of gray
tempstr="background_red=200; background_green=200; background_blue=200;";
write(eing,tempstr);
//--- define surface colour (one side):
tempstr="surface_red=22; surface_green=150; surface_blue=255;";
write(eing,tempstr);
//--- define surface colour (other side):
tempstr="inside_red=255; inside_green=192; inside_blue=0;";
write(eing,tempstr);
//--- define scaling factor
tempstr="scale_x=0.5; scale_y=0.5; scale_z=0.5;";
write(eing,tempstr);
//--- rotate a little bit
tempstr="rot_y=0.9013941717697173; rot_x=-0.5556596516994916; rot_z=0.103062920202253447;";
write(eing,tempstr);
//----------------------------------------------------------------------------
// change to the chart and extract the equation of the surface
// then draw the surface
//----------------------------------------------------------------------------
if(defined(S)){kill S;}
def S=re[2][endCharts[i]];
setring S;
//--- define equation of strict transform (hypersurface of dim 2)
ideal drawJ=simplify(mstd(radical(BO[1]+BO[2]))[2],2);
if(size(drawJ)>1)
{
//!!! unnoetig! Da kann man auch surface2,... machen
ERROR("Did not find generator of principal ideal " + string(drawJ));
}
tempstr="poly f = " + map2Surf(string(drawJ[1])) + ";";
write(eing,tempstr);
tempstr="surface = f;draw_surface;";
write(eing,tempstr);
//----------------------------------------------------------------------------
// now consider all exceptional curves in this chart separately
// and draw them
//---------------------------------------------------------------------------
if(!defined(dcE))
{
//--- Oups, exceptional curves not yet decomposed in this chart
//--- should not happen in practice
ERROR("The procedure intersectionDiv has not been used
on this tree of charts");
}
for(j=1;j<=size(dcE);j++)
{
//--- Run through all exceptional divisors (in the embedded sense)
for(k=1;k<=size(dcE[j]);k++)
{
//--- Run through all curves corresponding to the current divisor
if(deg(std(dcE[j][k][1])[1])==0)
{
//--- This one is empty - skip it
k++;
if(k>size(dcE[j])) {break;}
continue;
}
for(a=1;a<=size(inter[3]);a++)
{
//--- this curve belongs to which (Q-irred.) divisor in global numbering?
if(inIVList(intvec(endCharts[i],j,k),inter[3][a])) break;
}
if(a>size(inter[3]))
{
//--- curve not found in list
ERROR("Inconsistency between data of arguments 1 and 2");
}
whichE=a;
offset=0;
for(a=1;a<whichE;a++)
{
//--- count C-irred. divisors up to this (Q-irred. divisor) index
offset=offset+inter[4][a];
}
for(a=1;a<=size(dcE[j][k][7]);a++)
{
//--- run through all C-irred divisors corresponding to this Q-irred. one
//--- run through all generators of the ideal of the curve
//--- unfortunately the ideal is encoded in a string,
//--- and we need to work to find the generators
int tempint=find(dcE[j][k][6],",");
b=0;
cnt=1;
while(tempint!=0)
{
if(!find(dcE[j][k][7][a],"i"))
{
//--- 1) surf can only handle real numbers ==> we ignore the other curves
//--- 2) we can only form substrings of named strings:
tempstr=dcE[j][k][6]; // give it a name
tempstr=tempstr[b+1..tempint-1]; // find correct substring
tempstr="poly f" + string(offset+dcE[j][k][8][a])+ "_" +
string(b+1) + " = " +
map2Surf(plugInNumZero(tempstr,dcE[j][k][7][a])) + ";";
write(eing,tempstr);
tempstr="cutsurface" + string(cnt) + " = f" +
string(offset+dcE[j][k][8][a]) + "_" +string(b+1) + ";";
write(eing,tempstr);
cnt++;
}
b=tempint; // save end-mark
tempint=find(dcE[j][k][6],",",b+1); // next one please
}
if(!find(dcE[j][k][7][a],"i"))
{
tempstr=dcE[j][k][6]; // as before, but for last
tempstr=tempstr[b+1..size(tempstr)]; // fragment
tempstr="poly f" + string(offset+dcE[j][k][8][a])+ "_" +
string(b+1) + " = " +
map2Surf(plugInNumZero(tempstr,dcE[j][k][7][a])) + ";";
write(eing,tempstr);
tempstr="cutsurface" + string(cnt)+ " = f" +
string(offset+dcE[j][k][8][a]) + "_" +string(b+1) + ";";
write(eing,tempstr);
cnt++;
}
//--- draw the curve on the surface
if(cnt>1)
{
tempstr=colorlist[offset+dcE[j][k][8][a]];
write(eing,tempstr);
write(eing,"cut_with_surface;");
}
kill tempint;
}
}
}
if(!find(fnamebase,"/"))
{
//--- display needs fully qualified path to file
if(defined(outfile)) {kill outfile;}
string outfile=system("getenv","PWD") + "/" + fnamebase;
}
if(!defined(outfile))
{
tempstr="filename = \"" + fnamebase + string(endCharts[i]) + ".ras\";";
}
else
{
tempstr="filename = \"" + outfile + string(endCharts[i]) + ".ras\";";
}
write(eing,tempstr);
tempstr="color_file_format = sun;";
write(eing,tempstr);
tempstr="save_color_image;";
write(eing,tempstr);
close(eing);
j=system("sh", "surf -n " + fnamebase +string(endCharts[i]) + ".surf");
if(!defined(outfile))
{
j=system("sh","display " + fnamebase
+ string(endCharts[i]) + ".ras &");
}
else
{
j=system("sh","display " + outfile
+ string(endCharts[i]) + ".ras &");
kill outfile;
}
"Currently showing graphics for chart "+string(endCharts[i])
+" in separate window";
"Press <Return> to continue";
pause();
}
return(0);
}
//////////////////////////////////////////////////////////////////////////////
// static
proc plugInNumZero(string f,string num)
{
int i;
string fStr=f;
i=find(fStr,"t");
while(i!=0)
{
fStr = string(fStr[1..i-1]) + "(" + num + ")"
+ string(fStr[i+1..size(fStr)]);
i=find(fStr,"t");
}
return(fStr);
}
//////////////////////////////////////////////////////////////////////////////
// static
proc replaceInStr(string alles, string alt, string neu)
{
int i=find(alles,alt);
while(i!=0)
{
if((i-1)<1)
{
if(size(alt)==size(alles))
{
alles=neu;
}
else
{
alles=neu + string(alles[i+size(alt)..size(alles)]);
}
}
else
{
if(i+size(alt)>size(alles))
{
alles=string(alles[1..i-1]) + neu;
}
else
{
alles=string(alles[1..i-1]) + neu +
string(alles[i+size(alt)..size(alles)]);
}
}
i=find(alles,alt);
}
return(alles);
}
/////////////////////////////////////////////////////////////////////////////
// static
proc map2Surf(string str)
{
str=replaceInStr(str,string(var(1)),"x");
str=replaceInStr(str,string(var(2)),"y");
str=replaceInStr(str,string(var(3)),"z");
return(str);
}
/////////////////////////////////////////////////////////////////////////////
// static
proc prepareDcE(list re, list inter, list endCharts)
{
def R=basering;
//---Test whether we are in the irreducible surface case
def S=re[2][1];
setring S;
BO[2]=BO[2]+BO[1]; // make sure we are living in the smooth W
if(dim(std(BO[2]))!=2)
{
ERROR("The given original object is not a surface");
}
if(dim(std(slocus(BO[2])))>0)
{
ERROR("The given original object has non-isolated singularities.");
}
setring R;
//----------------------------------------------------------------------------
// Compute a non-embedded resolution from the given embedded one by
// dropping redundant trailing blow-ups
//----------------------------------------------------------------------------
//--- compute non-embedded resolution
int ii,j,k,a,b,comPa;
list abst=abstractR(re);
intvec endiv=abst[1];
intvec deleted=abst[2];
//--- identify the divisors in the various final charts
list iden0=collectDiv(re,deleted)[2];
// list of final divisors
//----------------------------------------------------------------------------
// For each Q-irred. divisor (specified in inter[3]), run through all
// occurrences and identify the different C-components
//----------------------------------------------------------------------------
for(ii=1;ii<=size(inter[3]);ii++)
{
//--- run through all Q-irred. curves,
//--- set up the first occurrence for reference
if(defined(S)) {kill S;}
def S=re[2][inter[3][ii][1][1]];
// inter[3] = list of Q-irred div.
// inter[3][ii] = ii-th thereof
// inter[3][ii][1] = first occurrence
// inter[3][ii][1][1] = corr. chart index
setring S;
dcE[inter[3][ii][1][2]][inter[3][ii][1][3]][8]=
intvec(1..ncols(dcE[inter[3][ii][1][2]][inter[3][ii][1][3]][4]));
//--- prepare the ideal of the divisor for mapping to different chart
if(defined(idlist1)){kill idlist1;}
list idlist1;
idlist1[1]=dcE[inter[3][ii][1][2]][inter[3][ii][1][3]][6];
exportto(Top,idlist1);
for(j=2;j<=size(inter[3][ii]);j++)
{
//--- now do the comparison with the other occurrences
//--- 1. find a common parent for inter[3][ii][1][1] and inter[3][ii][j][1]
if(defined(S)){kill S;}
def S=re[2][inter[3][ii][j][1]];
setring S;
if(defined(opath)){kill opath;}
def opath=imap(re[2][inter[3][ii][1][1]],path);
k=1;
while(opath[1,k]==path[1,k])
{
k++;
if((k>ncols(opath))||(k>ncols(path))) break;
}
comPa=int(leadcoef(opath[1,k-1]));
//--- 2. use fetchInTree to transfer the C-components
if(defined(str)) {kill str;}
if(defined(il)) {kill il;}
if(defined(mpi)) {kill mpi;}
if(defined(nulli)) {kill nulli;}
string str="idlist1";
attrib(str,"algext",imap(re[2][inter[3][ii][1][1]],dcE)[inter[3][ii][1][2]][inter[3][ii][1][3]][5]);
list il=fetchInTree(re,inter[3][ii][1][1],comPa,inter[3][ii][j][1],str,iden0,1);
list nulli=imap(re[2][inter[3][ii][1][1]],dcE)[inter[3][ii][1][2]][inter[3][ii][1][3]][7];
string mpi=imap(re[2][inter[3][ii][1][1]],dcE)[inter[3][ii][1][2]][inter[3][ii][1][3]][5];
if(mpi!=dcE[inter[3][ii][j][2]][inter[3][ii][j][3]][5])
{
ERROR("Problem identifying the appropriate field extension.!");
}
if(defined(ringt)){kill ringt;}
ring ringt=0,(t),dp;
if(defined(St)){kill St;}
def St=S+ringt;
setring St;
if(defined(strId)) {kill strId;}
string strId="ideal id1=" + il[1] + ";";
execute(strId);
id1=std(id1);
strId="ideal idj="
+ imap(S,dcE)[inter[3][ii][j][2]][inter[3][ii][j][3]][6]
+ ";";
execute(strId);
idj=std(idj);
if(defined(nullj)){kill nullj;}
list nullj=imap(S,dcE)[inter[3][ii][1][2]][inter[3][ii][1][3]][7];
if(defined(rcomp)){kill rcomp;}
strId="ring rcomp=complex,(" +varstr(basering) +"),(" +
ordstr(basering) + ");";
execute(strId);
def id1=imap(St,id1);
def idj=imap(St,idj);
ideal id10,idj0;
if(defined(tintvec)){kill tintvec;}
intvec tintvec;
tintvec[size(nullj)]=0;
for(a=1;a<=size(nullj);a++)
{
if(defined(numa)) {kill numa;}
strId="number numa=" + string(nullj[a]) + ";";
execute(strId);
idj0=subst(idj,t,numa);
for(b=1;b<=size(nulli);b++)
{
if(defined(numb)) {kill numb;}
strId="number numb=" + string(nulli[b]) + ";";
execute(strId);
id10=subst(id1,t,numb);
attrib(id10,"isSB",1);
if(size(reduce(idj0,id10))==0)
{
tintvec[a]=b;
break;
}
}
if(!find(string(tintvec),string(b)))
{
~;
ERROR("Problem identifying C-components in different charts.");
}
}
setring S;
dcE[inter[3][ii][1][2]][inter[3][ii][1][3]][8]=tintvec;
}
}
return(0);
}
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