/etc/stacks/constants.php is in stacks-web 1.35-1ubuntu1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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//
// Copyright 2010, Julian Catchen <jcatchen@uoregon.edu>
//
// This file is part of Stacks.
//
// Stacks is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// Stacks is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with Stacks. If not, see <http://www.gnu.org/licenses/>.
//
//
// Credentials to access Stacks MySQL databases
//
$db_user = "stacksweb";
$db_pass = "stacksweb";
$db_host = "localhost";
//
// Path to the MySQL client program
//
$mysql_bin = "/usr/bin/mysql";
//
// File system location of PHP/HTML files
//
$system_path = "_PKGDATADIR_" . "php/";
//
// Location of perl script to run the exporting jobs.
//
$export_cmd = "_BINDIR_" . "stacks_export_notify.pl";
//
// Name to print in page header
//
$site_title = "Stacks Analysis Pipeline";
//
// URL path to root of PHP/HTML files
//
$root_path = "/stacks";
$img_path = "/stacks/images";
//
// Length to wrap sequences at.
//
$display_len = 80;
//
// Colors for printing alleles/haplotypes
//
$colors = array("#008000",
"#c00000",
"#ffc600",
"#29356c",
"#860000",
"#dc6200",
"#4b398e",
"#008f56",
"#bf1e25",
"#4cb8ff");
$color_size = count($colors);
//
// Color map version 2; for printing alleles/haplotypes.
//
$color_map = array(
'a' => "#0074D9", // Blue
'b' => "#FF4136", // Red
'c' => "#008000", // Dark Green
'd' => "#FF851B", // Orange
'e' => "#001f3f", // Navy
'f' => "#85144b", // Maroon
'g' => "#F012BE", // Fuchsia
'h' => "#39CCCC", // Teal
'i' => "#3D9970", // Olive
'j' => "#01FF70", // Lime
'k' => "#FFDC00", // Yellow
'l' => "#B10DC9", // Purple
'm' => "#111111", // Black
'n' => "#7FDBFF", // Aqua
'o' => "#AAAAAA", // Gray
'p' => "#DDDDDD", // Silver
'q' => "#2ECC40", // Green
'r' => "#c00000",
's' => "#ffc600",
't' => "#29356c",
'u' => "#860000",
'v' => "#dc6200",
'w' => "#4b398e",
'x' => "#008f56",
'y' => "#bf1e25",
'z' => "#4cb8ff",
'A' => "#26081C",
'B' => "#C44900",
'C' => "#036016",
'D' => "#936426",
'E' => "#E87EA1",
'F' => "#692E38",
'G' => "#19423F",
'H' => "#625F64",
'I' => "#432534",
'J' => "#323845",
'K' => "#758E4F",
'L' => "#B287A3",
'M' => "#C0F8D1",
'N' => "#03440C",
'O' => "#8EDCE6",
'P' => "#D5DCF9",
'Q' => "#A7B0CA",
'R' => "#0CBABA",
'S' => "#725E54",
'T' => "#EE2677",
'U' => "#84A98C",
'V' => "#FCCA46",
'W' => "#A1C181",
'X' => "#443627",
'Y' => "#FE7F2D",
'Z' => "#2EBE62"
);
$color_map_size = count($color_map);
?>
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