/usr/share/stacks/php/stacks.js is in stacks-web 1.35-1ubuntu1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// Copyright 2010, Julian Catchen <jcatchen@uoregon.edu>
//
// This file is part of Stacks.
//
// Stacks is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// Stacks is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with Stacks. If not, see <http://www.gnu.org/licenses/>.
//
function toggle_div(id, root_path, page_state_form) {
var tr_obj = document.getElementById(id);
var caret = document.getElementById(id + "_img");
if (tr_obj.style.display == "none") {
tr_obj.style.display = "";
caret.src = root_path + "/caret-d.png";
update_page_state(page_state_form, id, 1);
}
else {
tr_obj.style.display = "none";
caret.src = root_path + "/caret-u.png";
update_page_state(page_state_form, id, 0);
}
}
function toggle_aln_tr(id, root_path, url) {
var tr_obj = document.getElementById(id);
var caret = document.getElementById(id + "_img");
if (tr_obj.style.display == "none") {
tr_obj.style.display = "";
caret.src = root_path + "/caret-d.png";
// Check if the alignment has been loaded, if not, load
// it in the iframe.
var iframe_obj = document.getElementById(id + '_iframe');
iframe_obj.src = url;
}
else {
tr_obj.style.display = "none";
caret.src = root_path + "/caret-u.png";
}
}
function toggle_sel(id) {
var div_obj = document.getElementById(id);
if (div_obj.style.display == "none") {
div_obj.style.display = "";
}
else {
div_obj.style.display = "none";
}
}
function set_operation(id, operation) {
if (operation == "reset") {
var verify = confirm("Are you sure you want to delete all corrections for this marker?");
if (!verify) return;
}
var form_obj = document.getElementById(id);
form_obj.op.value = operation;
form_obj.submit();
}
function toggle_cb(form_id, value) {
var form_obj = document.getElementById(form_id);
for(i = 0; i < form_obj.elements.length; i++)
if (form_obj.elements[i].value == value)
if (form_obj.elements[i].checked == true)
form_obj.elements[i].checked = false;
else
form_obj.elements[i].checked = true;
}
function toggle_genotypes(catalog_id, table_id, type) {
var table_obj = document.getElementById(table_id);
divs = table_obj.getElementsByTagName("div");
for(i = 0; i < divs.length; i++) {
if (divs[i].id.substr(0, 3) == type) {
if (divs[i].style.display == "none")
divs[i].style.display = "";
else
divs[i].style.display = "none";
}
}
//
// Adjust the height of the parent iframe to possibly accomodate more data
//
var iframe_obj = parent.document.getElementById(catalog_id + "_iframe");
if (iframe_obj)
iframe_obj.style.height = (this.document.body.offsetHeight+25) + 'px';
}
function toggle_sumstats(span_obj, col) {
var snp_index = document.getElementById("snp_index");
var old_snp = snp_index.value;
var old_snp_id = old_snp + "_snp";
var old_span_obj = document.getElementById(old_snp_id);
snp_index.value = col;
if (col == old_snp) return;
span_obj.className = "snp_sel";
old_span_obj.className = "snp";
var div;
var div_id;
div_id = old_snp + "_sumstats";
div = document.getElementById(div_id);
div.style.display = "none";
div_id = old_snp + "_fst";
div = document.getElementById(div_id);
div.style.display = "none";
div_id = col + "_sumstats";
div = document.getElementById(div_id);
div.style.display = "";
div_id = col + "_fst";
div = document.getElementById(div_id);
div.style.display = "";
}
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