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/usr/share/doc/t-coffee-examples/sample_rnaseq2.fasta is in t-coffee-examples 11.00.8cbe486-2.

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>OTTHUMT00000006707
uacGGAAGCUUUAGGGAGGUGCUCUGAGACCCGAAACUAGACUCGACUUU
AACAGACACAGACGACCCUGAAGAUGGAAAUGUUUUCUUCCAAAUUGUGC
UGCACGUUUUUGGCGAGAGCAUGGGGCUGUGCGGCGUCCCCUCCCUGGCG
CCCACCUGUGCCCUGCACACUGGCCUGCACUGUGGUGAUCUCGCUUGGCC
CCCACCUGAUUCCUGACAUACAGCAGAGGAAGCUUAGGCUCAGGUGGAAC
AGCCUCAACUGAUUCAGUCCCUGAACUUCCGUACACAGCCCUGGAGUCGU
CUUAGAgccaugauuuauuuaacuguucuuucauuuuacagaacauaaaa
uguauuguuuccaacuuuuuuccuaugguaaauaauacuaaaguaaauau
cucugugcaugaaucuuuuuguauauguuggaauauccuuaagauaaggc
cccagaacuaaaaguacccugucaaagggugagcauuuCCGGUUCCCCUG
CUGUGCUUUGCUGCGUUGUUCUCCCCUGCUGCAACGUUCUCACUCCACAA
UCCUGGGGCAGGUAGGGGAGGCCCAGCugaguuuggaucauaauccugaa
agacaca
>OTTHUMT00000043281
aucccagcuacucgggaggcugaggcaggagaaucacuugaacccgggag
gcagagguugcagugagccgagaucgcaccccugcacuccagccugggug
acagagcaagacuccaucucaaaaaaaauaaaggaaaUAUGCGUCGUUGG
AUGCUGUAUGACAAUCAAGCUACUUAUAACAAACAAAAUUGAGAAUGAAG
gauuaugauccaaacucAGCUGGGCCUCCCCUCCCUGCCCCAGGAUUGUG
GAGUGAGAACGUUGCAGCAGGAGAGAACAACGCAGCAAAGCACAGCAGGG
GAACCGgaaaugcucaccuuuugacaggguacuuuuaguucuggggccuu
aucuuaaggauauuccaacauauacaaaaagauucaugcacagagauaug
uacuuuaguauuauuuaccauaggaaaaaaguuggaaacaauacauuuua
uguucuguaaaaugaaagaacaguuaaauaaaucauggCUCUAAGACGAC
UCCAGGGCUGUGUACGGAAGUUCAGGGACAGAAUCAGUUGAGGCUGUUCC
ACCUGAGCCUAAGCUUCCUCUGCUGUAUGUCGGGAAUCAGGUGGGGGCCA
AGCGAGAUCACCACAGUGCAGGCCAGUGUGCAGGGCACAGGUGGGCACCA
GGGAGGGGACGCCGCACAGCCCCAUGCUCUCGCCAAAAACGUGCAGCACA
AUUUGGAAGAAAACAUUUCCAUCUGUUAAUAAAGAGCAAGGGCCUCUGGU
CAUAAGUG
>OTTHUMT00000007987
GAGGUGCUCUGAGACCCGAAACUAGACUCGACUUUAACAGACACAGACGA
CCCUGAAGGCGAGACugucugcuggugggaugcuggAUGGAAACGUUUUC
UUCCAAAUUGUGCUGCACGUUUUUGGCGAGAGCAUGGGGCUGUGCGGCGU
CCCCUCCCUGGCGCCCACCUGUGCCCUGCACACUGGCCUGCACUGUGGUG
AUCUCGCUUGGCCCCCACCUGAUUCCCGACAUACAGCAGAGGAACCUUAG
GCUCAGGUGGAACAGCCUCAACUGAUUCUGUCCCUGAACUUCCGUACACA
GCCCUGGAGUCGUCUUAGAGccaugauuuauuuaacuguucuuucauuuu
acagaacauaaaauguauuguuuccaacuuuuuuccuaugguaaauaaua
cuaaaguaaauaucucugugcaugaa