/usr/share/ampliconnoise/Scripts/Map.pl is in ampliconnoise 1.29-5build1.
This file is owned by root:root, with mode 0o755.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | #!/usr/bin/perl
use strict;
my $mapFile = $ARGV[0];
open(MAPFILE, $mapFile) or die "Can't open $mapFile\n";
my @map = ();
while(my $line = <MAPFILE>){
chomp($line);
my @tokens = split(/:/,$line);
push(@map, $tokens[2]);
}
close(MAPFILE);
my $nOTUs = 0;
while(my $line = <STDIN>){
chomp($line);
my @tokens = split(/ /,$line);
my $d = shift(@tokens);
$nOTUs = shift(@tokens);
print "$d $nOTUs ";
for(my $i = 0; $i < $nOTUs; $i++){
my @tokens2 = split(/,/,$tokens[$i]);
my $size = scalar(@tokens2);
for(my $j = 0; $j < $size - 1; $j++){
print "$map[$tokens2[$j]],";
}
print "$map[$tokens2[$size - 1]] ";
}
print "\n";
}
sub min
{
my ($x, $y) = @_;
if($x < $y){
return $x;
}
else{
return $y;
}
}
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