This file is indexed.

/usr/share/doc/bowtie/tests/example3.out is in bowtie 1.1.2-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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-	gi|110640213|ref|NC_008253.1|	148810	10:A>G,13:C>G
-	gi|110640213|ref|NC_008253.1|	2852852	8:T>A
-	gi|110640213|ref|NC_008253.1|	4930433	4:G>T,6:C>G
-	gi|110640213|ref|NC_008253.1|	905664	6:A>G,7:G>T
+	gi|110640213|ref|NC_008253.1|	1093035	2:T>G,15:A>T