/usr/lib/emboss/include/ensassembly.h is in emboss-lib 6.6.0+dfsg-3build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 | /* @include ensassembly *******************************************************
**
** Ensembl Assembly functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.12 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/02/04 10:30:23 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSASSEMBLY_H
#define ENSASSEMBLY_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajax.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* @data EnsPAssembly *********************************************************
**
** Ensembl Assembly
**
** An Ensembl Assembly object encapsulates assembly information how an
** assembled Ensembl Sequence Region is assembled from a particular
** component Ensembl Sequence Region.
**
** @alias EnsSAssembly
** @alias EnsOAssembly
**
** @attr Use [ajuint] Use counter
** @attr AssembledIdentifier [ajuint] Assembled Ensembl Sequence Region
** identifier
** @attr AssembledStart [ajuint] Assembled Ensembl Sequence Region
** start coordinate
** @attr AssembledEnd [ajuint] Assembled Ensembl Sequence Region
** end coordinate
** @attr ComponentIdentifier [ajuint] Component Ensembl Sequence Region
** identifier
** @attr ComponentStart [ajuint] Component Ensembl Sequence Region
** start coordinate
** @attr ComponentEnd [ajuint] Component Ensembl Sequence Region
** end coordinate
** @attr Orientation [ajint] Relative orientation
** @@
******************************************************************************/
typedef struct EnsSAssembly
{
ajuint Use;
ajuint AssembledIdentifier;
ajuint AssembledStart;
ajuint AssembledEnd;
ajuint ComponentIdentifier;
ajuint ComponentStart;
ajuint ComponentEnd;
ajint Orientation;
} EnsOAssembly;
#define EnsPAssembly EnsOAssembly*
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Assembly */
EnsPAssembly ensAssemblyNewCpy(const EnsPAssembly assembly);
EnsPAssembly ensAssemblyNewIni(ajuint asmsrid,
ajuint asmstart,
ajuint asmend,
ajuint cmpsrid,
ajuint cmpstart,
ajuint cmpend,
ajint orientation);
EnsPAssembly ensAssemblyNewRef(EnsPAssembly assembly);
void ensAssemblyDel(EnsPAssembly *Passembly);
ajuint ensAssemblyGetAssembledEnd(const EnsPAssembly assembly);
ajuint ensAssemblyGetAssembledIdentifier(const EnsPAssembly assembly);
ajuint ensAssemblyGetAssembledStart(const EnsPAssembly assembly);
ajuint ensAssemblyGetComponentEnd(const EnsPAssembly assembly);
ajuint ensAssemblyGetComponentIdentifier(const EnsPAssembly assembly);
ajuint ensAssemblyGetComponentStart(const EnsPAssembly assembly);
ajint ensAssemblyGetOrientation(const EnsPAssembly assembly);
AjBool ensAssemblyTrace(const EnsPAssembly assembly, ajuint level);
size_t ensAssemblyCalculateMemsize(const EnsPAssembly assembly);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSASSEMBLY_H */
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