/usr/include/bambamc/BamBam_SamFileDecoder.h is in libbambamc-dev 0.0.50-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 | /**
bambamc
Copyright (C) 2009-2013 German Tischler
Copyright (C) 2011-2013 Genome Research Limited
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
**/
#if ! defined(BAMBAMC_SAMFILEDECODER_H)
#define BAMBAMC_SAMFILEDECODER_H
#include <bambamc/BamBam_LineBuffer.h>
#include <bambamc/BamBam_SamInfo.h>
#include <bambamc/BamBam_BamAlignmentPut.h>
#include <stdio.h>
#define BAMBAMC_SAMFILEDECODER_MANDATORYCOLUMNS 11
typedef struct _BamBam_SamFileDecoder
{
FILE * closefile;
BamBam_BamFileHeader * header;
BamBam_LineBuffer * lb;
BamBam_SamInfo * saminfo;
BamBam_SamInfo_cptrpair fields[BAMBAMC_SAMFILEDECODER_MANDATORYCOLUMNS];
BamBam_AlignmentPut * aput;
} BamBam_SamFileDecoder;
extern BamBam_BamSingleAlignment * BamBam_SamFileDecoder_LoadAlignment(BamBam_SamFileDecoder * object);
extern BamBam_SamFileDecoder * BamBam_SamFileDecoder_Delete(BamBam_SamFileDecoder * object);
extern BamBam_SamFileDecoder * BamBam_SamFileDecoder_NewFd(FILE * file);
extern BamBam_SamFileDecoder * BamBam_SamFileDecoder_NewFilename(char const * filename);
extern BamBam_SamFileDecoder * BamBam_SamFileDecoder_New(char const * filename);
#endif
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