/usr/include/blasr/algorithms/alignment/BaseScoreFunction.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | #ifndef _BLASR_BASE_SCORE_FUNCTION_HPP_
#define _BLASR_BASE_SCORE_FUNCTION_HPP_
class BaseScoreFunction {
public:
int ins;
int del;
int substitutionPrior;
int globalDeletionPrior;
int affineExtend;
int affineOpen;
BaseScoreFunction(int insP = 0, int delP = 0, int subPriorP = 0,
int delPriorP = 0, int affineExtensionP = 0, int affineOpenP = 0);
};
#endif // _BLASR_BASE_SCORE_FUNCTION_HPP_`
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